TCONS_00052554-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052554-protein
Unique NameTCONS_00052554-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052554-protein ID=TCONS_00052554-protein|Name=TCONS_00052554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MMASANRKNHFKIVLLGEGCVGKTSLVLRYCQDKFNDKHLTTLQASFLNR
KINVDNKRVNLAIWDTAGQERFHALGPIYYRDSHGAILVFDITDEDSFQK
VKNWVKELKKMLGDDICLCIAGNKIDLEKDRNVQNSDAEEYARSVGAKLY
HTSAKLNKGIDELFLDLSKRMLAKQEEDEAQMASNPNSSKSRDASQRKRN
VVIVDEDEANKPAKSGCC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033235XLOC_033235Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052554TCONS_00052554Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 11..32
score: 44.49
coord: 114..127
score: 38.79
coord: 52..74
score: 51.03
coord: 34..50
score: 22.7
coord: 149..171
score: 27.05
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 11..174
e-value: 4.1E-67
score: 239.0
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 13..174
e-value: 7.6E-13
score: 44.5
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 16..210
e-value: 9.5E-10
score: 48.4
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 8..174
e-value: 8.6E-32
score: 121.6
NoneNo IPR availableGENE3D3.40.50.300coord: 75..172
e-value: 1.2E-32
score: 111.4
NoneNo IPR availableGENE3D3.30.70.1390coord: 9..74
e-value: 3.0E-25
score: 87.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..218
NoneNo IPR availablePROSITEPS51419RABcoord: 6..218
score: 31.787
NoneNo IPR availableCDDcd04123Rab21coord: 11..172
e-value: 1.54769E-104
score: 300.68
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 12..172
e-value: 1.1E-55
score: 187.6
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 10..164
e-value: 1.3E-27
score: 94.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..173

Blast
[Close]
BLAST of TCONS_00052554-protein vs. Swiss-Prot (Human)
Match: RAB21 (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 304.294 bits (778), Expect = 6.832e-106
Identity = 147/212 (69.34%), Postives = 172/212 (81.13%), Query Frame = 0 
Query:    7 RKNHFKIVLLGEGCVGKTSLVLRYCQDKFNDKHLTTLQASFLNRKINVDNKRVNLAIWDTAGQERFHALGPIYYRDSHGAILVFDITDEDSFQKVKNWVKELKKMLGDDICLCIAGNKIDLEKDRNVQNSDAEEYARSVGAKLYHTSAKLNKGIDELFLDLSKRMLAKQEEDEAQMASNPNSSKSRDASQRKRNVVIVDEDEANKPAKSGCC 218
            R   FK+VLLGEGCVGKTSLVLRYC++KFNDKH+TTLQASFL +K+N+  KRVNLAIWDTAGQERFHALGPIYYRDS+GAILV+DITDEDSFQKVKNWVKEL+KMLG++ICLCI GNKIDLEK+R+V   +AE YA SVGAK YHTSAK NKGI+ELFLDL KRM+   + DE   A    SS+   A   +R V I+D++   + +  GCC
Sbjct:   16 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDE--RAKGNGSSQPGTA---RRGVQIIDDEPQAQTSGGGCC 222
The following BLAST results are available for this feature:
BLAST of TCONS_00052554-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB216.832e-10669.34Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2... [more]
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