TCONS_00052606-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052606-protein
Unique Name	TCONS_00052606-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	339

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052606-protein ID=TCONS_00052606-protein|Name=TCONS_00052606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
SDKGHYVCPEDRSEMKLFPDKGREREILSKIVKCNNADNGCQWTKELRQL
KDHLASDCFYNLVECPRNECNEEVIAHHLADHMSDECEYRRLWCPFCFQR
YSFNLEEMEDHLLDECTRRLIPCQFANLGCEEQVHMENFIKHETDSAPYH
LKLAINKISEQDEMVQLQNEKLESQESKISELELSQKNLSNSLTQIQNRI
PAPIFSSNSFILKIHDFDKELDRAKKGIPMYRWFYTSRFHNLLIYIYLKG
ADKDYVGLYFSTTQGNFDDMIEWPMVARICSWTQNGGKLSNPHILDTSQY
KENFGNVTTKGGQGFPRFTRIDEVKEDTLIVKIKLAYKY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033255	XLOC_033255	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052606	TCONS_00052606	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001293	Znf_TRAF
IPR008974	TRAF-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..199
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 25..73 e-value: 5.8E-13 score: 48.3 coord: 96..142 e-value: 4.4E-6 score: 26.3 coord: 74..95 e-value: 0.0097 score: 15.6
IPR001293	Zinc finger, TRAF-type	PFAM	PF02176	zf-TRAF	coord: 53..99 e-value: 1.1E-5 score: 25.9 coord: 106..142 e-value: 5.6E-7 score: 30.0
IPR001293	Zinc finger, TRAF-type	PROSITE	PS50145	ZF_TRAF	coord: 53..97 score: 10.722
IPR008974	TRAF-like	GENE3D	2.60.210.10		coord: 210..336 e-value: 2.4E-8 score: 34.2
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 32..100
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 208..335

Blast

[Close]

BLAST of TCONS_00052606-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.213e-24
Identity = 101/415 (24.34%), Postives = 176/415 (42.41%), Query Frame = 0

Query:    2 DKGHYVCPEDRS---EMKLFPDKGREREILSKIVKCNNADNGCQWTKELRQLKDHLASDCFYNLVECPRNECNEEVIAHHLADHMSDECEYRRLWCPFCFQRYSFN------------------------LEEMEDHLLDECTRRLIPCQFANLGCEEQVHMENFIKHETDSAPYHLKL---AINKIS--------------------------EQDEMVQLQNEKLESQESKISELELSQKNLSNSLTQIQNRIPAPIFSSNSFILKIHDFDKELDRAKKGIPMY---RWFYTSRFHNLL---IYIYLKGADK--DYVGLYFSTTQGNFDDMIEWPM--VARICSWTQNGGKLSNPH--ILDTSQYKENFGNVT---TKGGQGFPRFTRIDE------VKEDTLIVKIKLAYKY 339
            D GH  CP D     E +LFPD   +REILS +VKC N   GC    ELR L+DH A  C + L++CP  +C       H+  H+  +C  R++ C  C    +F                          E+M +H   +C    IPC F+  GC E++   +  +H  ++   H+++   A++ +S                           QD  ++    K+E+Q   +SEL+ + + L + + +I+ +       +  +I KI +F   L   ++  P+      FYT +    L   +++ L  A +  +Y+ L+  T QG +D  + WP     R+    Q+   +   H  I+D       F   T      G G+  F  ++       +K+DTL+V+ +++ ++
Sbjct:  100 DAGHK-CPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQA-HCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQ-----CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF 503

The following BLAST results are available for this feature:

BLAST of TCONS_00052606-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052606-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRAF6	1.213e-24	24.34	TNF receptor-associated factor 6 OS=Homo sapiens G...	[more]

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TCONS_00052606-protein (polypeptide) - C. hemisphaerica