TCONS_00052634-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052634-protein
Unique NameTCONS_00052634-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052634-protein ID=TCONS_00052634-protein|Name=TCONS_00052634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MTKGGYDVELVNGELENDITCSICLFILKDPMQAIECGHRFCKTCVAGLQ
KGVNGSYVCPEDRAETAFYPDKGRGREILGFAVRCSNKMLGCPWVKELRE
VEDHKEQCDFKIVKCVVESCAEEFQRRYEDQHYKKCKYRMVQCPFCNEDY
IFAFEEEHIDDCEEFLECCDYCSDIDIPRSKMDIHLSKDCKKIPLCCPYE
PLGCKEKMLFSDLEKHEVISTQHHLKLAINKITNQQEQIQLLMDNQNQLL
ERLSKVEGKSDAILLMKDQHIWRIPRFSDEIRKAKNLGRHHTLSKFIYTS
KGYRLECILQPYQRLFQSGTLLSCRTTVGSFDESLTWPMNKFMITSCIID
PQGIARDKTSVTTTNSRAFKKPPHLNPGATSFFIPDENVEKYTFIGILTI
KIQIADV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033263XLOC_033263Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052634TCONS_00052634Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR018957Znf_C3HC4_RING-type
IPR008974TRAF-like
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 225..252
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 13..62
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 21..62
e-value: 1.6E-5
score: 34.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 21..63
score: 11.752
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 20..60
e-value: 3.61511E-5
score: 40.1216
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 123..152
e-value: 0.0018
score: 18.0
coord: 162..216
e-value: 5.1E-5
score: 22.9
coord: 75..122
e-value: 6.5E-10
score: 38.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 5..74
e-value: 3.2E-10
score: 38.8
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 104..149
e-value: 3.2E-5
score: 24.4
coord: 158..216
e-value: 2.6E-8
score: 34.3
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 158..214
score: 10.338
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 104..149
score: 9.083
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 21..60
e-value: 1.5E-8
score: 34.3
IPR008974TRAF-likeGENE3D2.60.210.10coord: 270..407
e-value: 9.1E-4
score: 19.3
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 268..373
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 83..150
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 37..46

Blast
[Close]
BLAST of TCONS_00052634-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.435e-35
Identity = 132/453 (29.14%), Postives = 200/453 (44.15%), Query Frame = 0 
Query:    5 GYDVELVNGELENDITCSICLFILKDPMQAIECGHRFCKTCVAGLQKGVNGSYVCPEDRA---ETAFYPDKGRGREILGFAVRCSNKMLGCPWVKELREVEDHKEQCDFKIVKCVVESCAEEFQRRYEDQH-YKKCKYRMVQCPFCNEDYIFAFEEEHIDDCEEFLECCDYCSDIDIPRSKMDIHLSKDCKKIPLCCPYEPLGCKEKMLFSDLEKHEVISTQHHLKLA---------------INKITNQQEQI-QL---LMDNQNQLLERLSKVEGKS--------------DAILLMKDQ-----HIWRIPRFSDEIRKAKNLGRHHTLSKFIYTSK-GY----RLECILQPYQRLFQSGTLLSCRTTVGSFDESLTWPMNKFMITSCIIDPQGIARDKTSVTTTNSR----AFKKPP-HLNPGATSF--FIPDENVEKYTFIGILTIKIQ 403
            GYDVE  +  LE+   C ICL  L++ +Q   CGHRFCK C+  ++   +  + CP D     E   +PD    REIL   V+C N+  GC    ELR +EDH+  C+F ++ C    C   FQ+ + + H  K C  R V C  C     F  +E H  +C      C+YC+ I I R +M  H   DC   P+ C +   GC EKM  + L +H   +TQ H+++                I+++ N QE I QL   L+   +Q+ E  +K+E +S              D +  ++ Q     +IW+I  F   ++  +        S   YT K GY    RL   L   QR     +L    T  G +D  L WP  +  I   I+D       +      +++    AF++P    NP    +  F+  E + + TFI   T+ ++
Sbjct:   55 GYDVEF-DPPLESKYECPICLMALREAVQT-PCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLF-VHTMQGEYDSHLPWPF-QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00052634-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF61.435e-3529.14TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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