TCONS_00052656-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052656-protein
Unique Name	TCONS_00052656-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	661

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052656-protein ID=TCONS_00052656-protein|Name=TCONS_00052656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=661bp
MLSYSNLIIPQNHNREISKMADLFTEILEPNMEPARNETFSVKWSGVGKL
LATSQPSESNKGGIQYLQELNLKNDWHSPVMRKLLNEAHSIFINLQETSE
HEKPSLETLQKTSLQYRAVIQSCVLKIKEKIKDERNRANIEKLQTELDYF
SIMEMVWHLCEVLWVETPSGGYCLHQLLTWVKWHFNDPDQLGQDVMSSDD
PYSHPNYWTTIYGFVFQGRLVEVSDLLKHHPYRDSIDVFANLEDLLNSMP
VFKVLDGQSVNEFLSKWTKWQNECSSQLKNGYFSQYPEIEKMMEIICGDD
KEVLQNSHVCQSWQQLMVAKILYTDPTVKTFNLKQYAVESMEQFNGIGKV
TKLDEIILSILSYDMHKVIEKCSEALPTWWFSAHLTDLLSHAGLLKSFHL
DYGDELREFLLLEFAASLMSHSSLWVVGADYLMSNCPTSGRHHLERYIEK
IPIDCEKKALKIIRLCEKYGFAEQSRSICKVLGMKALRRNRLGVALSWCL
RAKDEEFAAYLTEKFLNHYIDTGKFTQCDLIDNLGSSMLLNNKLTFLGKY
YEFHKLYSSEEFNEAASLLVSLLTSNLAPKRFWMILLTDALPLLESKEMI
ISSEQTFELLQCLKELQLCHEPLLADTKHMANKVIEEEENDRIQLLNLAL
TKNLSRALLVV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033272	XLOC_033272	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052656	TCONS_00052656	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011502	Nucleoporin_Nup85

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..148
IPR011502	Nucleoporin Nup85-like	PFAM	PF07575	Nucleopor_Nup85	coord: 67..615 e-value: 7.5E-152 score: 506.7

Blast

[Close]

BLAST of TCONS_00052656-protein vs. Swiss-Prot (Human)
Match: NUP85 (Nuclear pore complex protein Nup85 OS=Homo sapiens GN=NUP85 PE=1 SV=1)

HSP 1 Score: 501.901 bits (1291), Expect = 1.602e-170
Identity = 249/592 (42.06%), Postives = 380/592 (64.19%), Query Frame = 0

Query:   75 DWHSPVMRKLLNEAHSIFINLQETSEH--EKPSLETLQKTSLQYRAVIQSCVLKIKEKIKDERNRANIEKLQTELDYFSIMEMVWHLCEVLWVETPSGGYCLHQLLTWVKWHFNDPDQLGQDVMSSDDPYSHPNYWTTIYGFVFQGRLVEVSDLLKHHPYRD--SIDVFANLEDLLNSMPVFKVLDGQSVNEFLSKWTKWQNECSSQLKNGYFSQYPEIEKMMEIICGDDKEVLQNSHVCQSWQQLMVAKILYTDPTVKTFNLKQYAVESMEQF-NGIGKVTKLDEIILSILSYDMHKVIEKCSEALPTWWFSAHLTDLLSHAGLLKSFHLDYGDELREFLLLEFAASLMSHSSLWVVGADYLMSNCPTSGRHHLERYIEKIPIDCEKKALKIIRLCEKYGFAEQSRSICKVLGMKALRRNRLGVALSWCLRAKDEEFAAYLTEKFLNHYIDTGKFTQCDLIDNLGSSMLLNNKLTFLGKYYEFHKLYSSEEFNEAASLLVSLLTSNLAPKRFWMILLTDALPLLESKEMIISSEQTFELLQCLKELQLCHEPLL--ADTKHMANKVIEEEENDRIQLLNLALTKNLSRALL 659
            D +S ++RKL NE+H IF+ LQ   E    K     L + S  YR+VI++C+ ++ +     ++ AN  +  +++   S ME++W+LCE+L++E    G  L  LL WV+ H  + D L  DV+ S++P  H ++W  +   V QGRL E   +L         S  +   + DL+ +MP+    + Q++ E   KW  W  EC   L++  F+  P +E +++I+ GD+  +L+   +  +W   +V ++LY++PTVK  +L  YA  S++ F  G      LD I+L+   +D+H+VI++CS AL  WWF AHLTDLL H  LL+S +L +G  +REFLLLE+A+ L +H SLW +G DY    CP  GR  LE +IE+IP++ E+KALK++R+CE+    EQ RSICK+L MKA+R NRLG ALSW +RAKD  FA  ++++FL  Y + G F+  DLIDNLG +M+L+++LTFLGKY EFH++Y  + F +AASLL+SL+TS +AP+ FWM LLTDALPLLE K++I S+EQT+EL++CL++L     P+   +DT+ + +  I   E  ++++L L+L +NL+RA++
Sbjct:   62 DVYSQILRKLFNESHGIFLGLQRIDEELTGKSRKSQLVRVSKNYRSVIRACMEEMHQVAIAAKDPANGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSLSADVLGSENPSKHDSFWNLVTILVLQGRLDEARQMLSKEADASPASAGICRIMGDLMRTMPILSPGNTQTLTELELKWQHWHEECERYLQDSTFATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVTRLLYSNPTVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDYF-DYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLGKYREFHRMYGEKRFADAASLLLSLMTSRIAPRSFWMTLLTDALPLLEQKQVIFSAEQTYELMRCLEDLT-SRRPVHGESDTEQLQDDDI---ETTKVEMLRLSLARNLARAII 648

The following BLAST results are available for this feature:

BLAST of TCONS_00052656-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052656-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUP85	1.602e-170	42.06	Nuclear pore complex protein Nup85 OS=Homo sapiens...	[more]

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TCONS_00052656-protein (polypeptide) - C. hemisphaerica