TCONS_00052815-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052815-protein
Unique NameTCONS_00052815-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052815-protein ID=TCONS_00052815-protein|Name=TCONS_00052815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MTTAARPTFDTARGGQQRGEGNLASLTKQYSARDLPSHTKIKTRQIGQDT
AEEIRSRDFKHDLMERERSSREKSKKGSSNSSDYSSSSKRQRLDYDRHSS
HHHSSAAIDADDPVDDEDEDDSDDDSDDDDDTAELLAELQRIKRDRAEEM
LKQEQEKRTEDERIRTENLISGNPLLNQNQQQEGDFKVTRRWDDDVVFKN
CAKDDDKPKNSGFINDTIRSEFHKKFMDKYIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033378XLOC_033378Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052815TCONS_00052815Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006973Cwf_Cwc_15
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 136..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..183
IPR006973Pre-mRNA-splicing factor Cwf15/Cwc15PFAMPF04889Cwf_Cwc_15coord: 1..232
e-value: 1.2E-72
score: 244.6

Blast
[Close]
BLAST of TCONS_00052815-protein vs. Swiss-Prot (Human)
Match: CWC15 (Spliceosome-associated protein CWC15 homolog OS=Homo sapiens GN=CWC15 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.561e-70
Identity = 135/245 (55.10%), Postives = 176/245 (71.84%), Query Frame = 0 
Query:    1 MTTAARPTFDTARGGQQRGEGNLASLTKQYSARDLPSHTKIKTRQIGQDTAEEIRSRDFKHDLME----------RERSSREKSKKGSSNSSDYSSSSKRQRLDYDRHSSHHHSSAAIDADDPVDDEDEDDSDDDSDDDDDTAELLAELQRIKRDRAEEMLKQEQEKRTEDERIRTENLISGNPLLNQN--QQQEGDFKVTRRWDDDVVFKNCAKD-DDKPKNSGFINDTIRSEFHKKFMDKYIK 232
            MTTAARPTF+ ARGG+ +GEG+L+ L+KQYS+RDLPSHTKIK RQ  QD  EE+R+RDF+ +L E          R+R +RE +          SS SK+ RLD          +A +DADDP+  ++ED+  ++  DDDDTA LLAEL++IK++RAEE  ++EQE++ E+ERIR EN++SGNPLLN     Q + +FKV RRWDDDVVFKNCAK  DD+ K+  F+NDT+RSEFHKKFM+KYIK
Sbjct:    1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFRRELEERERAAAREKNRDRPTREHTTS--------SSVSKKPRLD-------QIPAANLDADDPL-TDEEDEDFEEESDDDDTAALLAELEKIKKERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229
The following BLAST results are available for this feature:
BLAST of TCONS_00052815-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CWC151.561e-7055.10Spliceosome-associated protein CWC15 homolog OS=Ho... [more]
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