7 transmembrane protein (polypeptide) - C. hemisphaerica

Overview
Name7 transmembrane protein
Unique NameTCONS_00053034-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053034-protein ID=TCONS_00053034-protein|Name=7 transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MEESSAEYKILASAGIMVLILLSLFGNILVCCAVYHSRNLRARVNILIVS
LAVSDILIATISMPLWMNLILTNYRNMSHQATIRMLEFSMFVDILGGIAS
IGNLVAISYERLWSVFSPLNHRRYLTNFTLGIIVACVWAYAIFVAATTVA
WFHTWYYVTLYNAIVGFFFPLFLIIVAYLCIFIIVNKSPRTVVSTEDSFK
INLTICIIVGLFVVCWAPHFIFSVLHQHCEVCYNHLLDNLWYRSLSTWLH
YANSCVNPLVYGIANAQYQEAFKHVLKRLCQCCFFKKDTLQDTERLPSLY
FPNGHQERCNMNDKLRVELEPDEKELVTGAVGYDEDHSYPPGDYRALPIF
PAGHRNRRWTSDTSTTTETFLSTSLMETPIMEDEHAQTALIIPTVYIHH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033493XLOC_033493Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053034TCONS_00053034Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 11..35
score: 27.37
coord: 243..269
score: 28.33
coord: 159..182
score: 28.95
coord: 93..115
score: 29.92
coord: 201..225
score: 29.84
coord: 129..150
score: 15.98
coord: 44..65
score: 32.28
IPR000276G protein-coupled receptor, rhodopsin-likeSMARTSM013817TM_GPCR_Srsx_2coord: 20..276
e-value: 0.0087
score: -68.5
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 26..261
e-value: 1.1E-31
score: 109.9
NoneNo IPR availableGENE3D1.20.1070.10coord: 2..311
e-value: 5.7E-59
score: 199.1
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 7..284
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 26..261
score: 31.505

Blast
[Close]
BLAST of 7 transmembrane protein vs. Swiss-Prot (Human)
Match: DRD1 (D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.960e-22
Identity = 92/377 (24.40%), Postives = 162/377 (42.97%), Query Frame = 0 
Query:   26 GNILVCCAVYHSRNLRARV-NILIVSLAVSDILIATISMPLWMNLILTNYRNMSHQATIRMLEFSMFVDILGGIASIGNLVAISYERLWSVFSPLNHRRYLTNFTLGIIVACVWAYAIFVAATTVAWFHTWYYV----------------------------TLYNAIVGFFFPLFLIIVAYLCIFIIVNKSPRTVVS-------------------------TEDSFKINL--------TICIIVGLFVVCWAPHFIFSVLHQHCEVCYNH--LLDNLWYRSLSTWLHYANSCVNPLVYGIANAQYQEAFKHVLK--RLCQCCFFKKDTLQDTERLPSLYFPNGHQERCNMNDKLRVELEPDEKELVTGAVGYDED 336
            GN LVC AV   R+LR++V N  ++SLAVSD+L+A + MP      +  +        I +       DI+   ASI NL  IS +R W++ SP  + R +T     I+++  W  ++ ++   V    +W+                               + ++++ F+ P+ ++IV Y  I+ I  K  R + +                          E SFK++         T+ +I+G+FV CW P FI + +   C         +D+  +  +  W  +ANS +NP++Y   NA +++AF  +L   RLC       +T+       ++ F + H+ R +++ +  +        L+  AVG  ED
Sbjct:   40 GNTLVCAAVIRFRHLRSKVTNFFVISLAVSDLLVAVLVMPWKAVAEIAGFWPFGSFCNIWVA-----FDIMCSTASILNLCVISVDRYWAISSPFRYERKMTPKAAFILISVAWTLSVLISFIPVQL--SWHKAKPTSPSDGNATSLAETIDNCDSSLSRTYAISSSVISFYIPVAIMIVTYTRIYRIAQKQIRRIAALERAAVHAKNCQTTTGNGKPVECSQPESSFKMSFKRETKVLKTLSVIMGVFVCCWLPFFILNCILPFCGSGETQPFCIDSNTF-DVFVWFGWANSSLNPIIYAF-NADFRKAFSTLLGCYRLCPATNNAIETVSINNNGAAM-FSSHHEPRGSISKECNLVY------LIPHAVGSSED 400
The following BLAST results are available for this feature:
BLAST of 7 transmembrane protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRD11.960e-2224.40D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE... [more]
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