TCONS_00053111-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053111-protein
Unique NameTCONS_00053111-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length156

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053111-protein ID=TCONS_00053111-protein|Name=TCONS_00053111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MSEQTEKAYQKQPTIFQNKKRVAGKVTKAKEQRFVKSVGLGFKTPREAIE
GTFIDKKCPFTGNVSIRGRILTGIVQNMKMKRTITLRRDYLHFIKKYQRF
EKRHKNLVAHMSPCFRDVQHGDLVTVGQCRPLSKTVRFNVLKVAKTNSAK
KSFEKF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033543XLOC_033543Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053111TCONS_00053111Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR032440Ribosomal_S11_N
IPR019979Ribosomal_S17_CS
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 87..110
score: 38.33
coord: 121..131
score: 57.82
coord: 131..138
score: 73.25
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 73..142
e-value: 1.2E-24
score: 86.1
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 69..140
e-value: 2.0E-30
score: 328.0
NoneNo IPR availableGENE3D2.40.50.140coord: 69..156
e-value: 1.6E-33
score: 114.1
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 4..71
e-value: 3.3E-34
score: 117.0
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 121..133
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 67..147

Blast
[Close]
BLAST of TCONS_00053111-protein vs. Swiss-Prot (Human)
Match: RS11 (40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 1.269e-84
Identity = 115/154 (74.68%), Postives = 133/154 (86.36%), Query Frame = 0 
Query:    4 QTEKAYQKQPTIFQNKKRVA-GKVTKAKEQRFVKSVGLGFKTPREAIEGTFIDKKCPFTGNVSIRGRILTGIVQNMKMKRTITLRRDYLHFIKKYQRFEKRHKNLVAHMSPCFRDVQHGDLVTVGQCRPLSKTVRFNVLKVAKTNSAKKSFEKF 156
            QTE+AYQKQPTIFQNKKRV  G+  K K  R+ K++GLGFKTP+EAIEGT+IDKKCPFTGNVSIRGRIL+G+V  MKM+RTI +RRDYLH+I+KY RFEKRHKN+  H+SPCFRDVQ GD+VTVG+CRPLSKTVRFNVLKV K    KK F+KF
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
The following BLAST results are available for this feature:
BLAST of TCONS_00053111-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS111.269e-8474.6840S ribosomal protein S11 OS=Homo sapiens GN=RPS11... [more]
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