TCONS_00053793-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053793-protein
Unique Name	TCONS_00053793-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1105

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053793-protein ID=TCONS_00053793-protein|Name=TCONS_00053793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1105bp
MQFFKRGIKSKFSAATNNTAELSDLDIKKHADFIRETQEELEKLMKKKHE
FSFRIEDYNKNSKDDASVGSSKGSSTLEEAGSSDNKDVSTPEGRKRKTIR
RSLSLPSSSRVKSVAKLPTSFTPRKMDSTERVETRKRAVTEIKDKNSQRK
QNESNNKHSNWTQIEPKHAKSPPKGVWQVTCQQSASKEAKKHEDIDNDNI
DSEISSISDFDDEITENQKRQTNFTPKESIITVPKATTNESFDTSLHHRP
IQKQVGKAKLLLPNDANQTKKPLGHQKEIPAAPKSPGSLVVTKALTIEKE
KIMNQSDSYITWVNSQLGKRDKSRHVKDLSKDMRDGVVFLQLVEVISDSE
QQILDHSQLSINDMRYNLNNVLQFLSNNNVRVHHILPKEIIEGNLKTTMR
LILALAAHFKPDSFNYNALNNNTSTPLKTNTSTPVSKSTKKKSMQRAPSL
VSLASEAAASLAEASKNASKGGSTSRSSRIRKQQLFDSVPPKTKHVSQRH
QQSSNQYQASKSFTMPSSSYHNRSESTPPPFERPKTLRGESCSAQTRPKS
LRLENTQIPDLPKNVFKPIRNSRISVTEFPTDGSEIKTKISTEASSTNIE
NVKRALLLEDKLLPSSKSTDVDSVRRTLLKEDHTCFSLTSRDNVKRTLIP
GSESEGSEVQDELTGLHDDLLEELSDAKDVMQQLQTVLMNGRTSEEMLGL
ESPRDESFQEQLVVKNIMLEQIENECADLRHQLNEYKEINMRLTNEKHGV
ELRFSQQEQLILSLKSKLLEHEQPNVKKQSEQQLQALLSEKNNEVQLLYD
ELSKRDTIIEKHKNELDSMSNDIVNKKRSEASLYAKLESSESMVSSLQLQ
LHEATENLHLQGNNTQQQRSNNFRVPQHETDTNTTKLQDAKIHRIKQKIT
REHHNLSTTLKNIKGNFPSNDPVQHAFQSIEHSLSSLMDSVSMLDVTKTQ
QKTQQGQYPSNKPQTINSSSHKKPHKTSDQYQRLSLPKHHSSRSTRTKSS
ISSDSGYDHTNTNNTLDASEQVKIVYFLGKSVTPILKSSDIGLGYLTLHD
FKELVNRPGKYRYFFKSKDKDFGFVREELLYDEDLVPGYENKIVSWIEKL
SVEEV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033951	XLOC_033951	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053793	TCONS_00053793	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001715	CH-domain
IPR001158	DIX
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 809..829
None	No IPR available	COILS	Coil	Coil	coord: 837..857
None	No IPR available	COILS	Coil	Coil	coord: 719..746
None	No IPR available	COILS	Coil	Coil	coord: 777..801
None	No IPR available	COILS	Coil	Coil	coord: 667..687
None	No IPR available	COILS	Coil	Coil	coord: 27..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 862..886
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..451
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 947..1014
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 464..549
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..211
IPR001715	Calponin homology domain	SMART	SM00033	ch_5	coord: 305..408 e-value: 1.3E-9 score: 47.9
IPR001715	Calponin homology domain	GENE3D	1.10.418.10		coord: 290..413 e-value: 1.4E-21 score: 76.2
IPR001715	Calponin homology domain	PFAM	PF00307	CH	coord: 305..410 e-value: 4.6E-16 score: 58.9
IPR001715	Calponin homology domain	PROSITE	PS50021	CH	coord: 303..410 score: 14.439
IPR001715	Calponin homology domain	CDD	cd00014	CH	coord: 312..409 e-value: 6.41296E-12 score: 62.7135
IPR001715	Calponin homology domain	SUPERFAMILY	47576	Calponin-homology domain, CH-domain	coord: 292..422
IPR001158	DIX domain	SMART	SM00021	dax_2	coord: 1019..1101 e-value: 4.1E-13 score: 59.6
IPR001158	DIX domain	PFAM	PF00778	DIX	coord: 1021..1098 e-value: 4.0E-20 score: 71.4
IPR001158	DIX domain	PROSITE	PS50841	DIX	coord: 1019..1101 score: 23.794
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 1020..1100

Blast

[Close]

BLAST of TCONS_00053793-protein vs. Swiss-Prot (Human)
Match: DIXC1 (Dixin OS=Homo sapiens GN=DIXDC1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 7.960e-33
Identity = 119/458 (25.98%), Postives = 224/458 (48.91%), Query Frame = 0

Query:  650 PGSESEGSEVQDELTGLHDDLLEELSDAKDVMQQLQTVLMNGRTSEEM----LGLESPRDESFQEQLVVKNIMLEQIENECADLRHQLNEYKEINMRLTNEKHGVELRFSQQEQLILSLKSKLLEHEQPNVKKQSEQQ----LQALLSEKNNEVQLLYDELSKRDTIIEKHKNELDSMSNDIVNKKRSEASLYAKLESSESMVSSLQLQLHEATENLHLQGNNTQQQRSNNFRVPQHETDTNTTKLQDAKIHRIKQKITREHHNLSTTLKNIKGNFPSNDPVQHAFQSIEHSLSSLMDSVSMLDVTKTQQKTQQGQYPSNKPQTINSSSHKKPHKTSDQYQRLSLPKHHSSRSTRTKSSISSDSGYDHTNTNNTLDASEQVKIVYFLGKSVTPILKSSDIGLGYLTLHDFKELVNRPGKYRYFFKSKDKDFGFVREELLYDEDLVPGYENKIVSWIEK 1099
            PG+  E S  +++L    + L +E+ +AK ++  LQ +L+NG   E+     L L  P   + +EQL++    L+Q   E  DL+ +L + K+    L   K  ++ R +QQ+  +L LK +LL   + N+ K         LQ  L E+N  +     EL ++D ++++H+ +L+     + +    +  L  +LE  + +++    +  EA E  +   +N+Q   SN F +P       +          +  + T +   +   L++++ +F  +DP  H   S+E  +SSLM+ + +++     QK Q+ +     P+T   S +++                          S   +S   H+ ++ T+ +S   K++YF  +S+TP + +    L  +TL DFK  ++R G +RY FK+ D +FG V+EE+ +D+D +PG+E KIV+W+E+
Sbjct:  272 PGTYLETS-WEEQLLEQQEYLEKEMEEAKKMISGLQALLLNGSLPEDEQERPLALCEP-GVNPEEQLIIIQSRLDQSMEENQDLKKELLKCKQEARNLQGIKDALQQRLTQQDTSVLQLKQELL---RANMDKDELHNQNVDLQRKLDERNRLLGEYKKELGQKDRLLQQHQAKLEEALRKLSDVSYHQVDLERELEHKDVLLAHCMKR--EADEATNYNSHNSQ---SNGFLLPTAGKGATS----------VSNRGTSDLQLVRDALRSLRNSFSGHDPQHHTIDSLEQGISSLMERLHVMET----QKKQERKVRVKSPRTQVGSEYRE--------------------------SWPPNSKLPHSQSSPTV-SSTCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEIFHDDDAIPGWEGKIVAWVEE 678

HSP 2 Score: 107.457 bits (267), Expect = 1.024e-23
Identity = 49/126 (38.89%), Postives = 82/126 (65.08%), Query Frame = 0

Query:  305 QSDSYITWVNSQLGKRDKSRHVKDLSKDMRDGVVFLQLVEVISDSEQQILDHSQLSINDMRYNLNNVLQFLSNNNVRVHHILPKEIIEGNLKTTMRLILALAAHFKPDSFNYNALNNNTSTPLKTN 430
            Q  +Y+ WVN+QL KR   + V+DL +D+RDGV+   L+E+++  +   +  S  +  +M+ N+  VLQF+++  +R+H    K+I++GNLK+ MRL+LALAAHFKP S        ++  PL+++
Sbjct:   22 QLQAYVAWVNAQLKKRPAVKPVQDLRQDLRDGVILAYLIEIVAGEKLSGVQLSPGNQQEMKNNVEKVLQFVASKKIRMHQTSAKDIVDGNLKSIMRLVLALAAHFKPGSSRTVNQGRDSRAPLQSH 147

The following BLAST results are available for this feature:

BLAST of TCONS_00053793-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053793-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DIXC1	7.960e-33	25.98	Dixin OS=Homo sapiens GN=DIXDC1 PE=1 SV=2	[more]

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TCONS_00053793-protein (polypeptide) - C. hemisphaerica