TCONS_00054037-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054037-protein
Unique NameTCONS_00054037-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length990

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054037-protein ID=TCONS_00054037-protein|Name=TCONS_00054037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=990bp
MDLSLSSTTMLNFYTLPMLLRRYLELKLLTLLGSQSMLSFMKMIEPKWLK
RSCPVLILIIQQNQXVAEEIMSSTYFDHSTESTYMDFLGENIDVEKRCIT
LDFRVKVSDSDRESSYRHLSCVGRWQSFKKLEESGFLSKVLILFATVKTE
MREIAPPEDAIPSFMTKQGLDLSFIFVDQNCPPVTGYTSYELLGKSLYMF
VHVDDLPEIHSAHDNLTKNRCKEVQTFFRFCSKGEEWLLLKVVMQMKSSE
GTMQPDFISMCFYMANQEEILAFRENAMVKSNETLRILKKTNDGLSDKKP
VSLVHQQAAPGANEEVQKMDSDTKGDLLPQESTSEGDPQSEKDEEKEIEQ
TLEIQQLLHSQLTDKHKSLAESFVKQERQLERINKIMTEYKAKMEDPAFK
AHFSEQLEMFDYFKYLLKKHKRQQDYLQKQVRGKVKDLELRARAVKLRNM
VSHQQKVLKDIRIRRKNEDDPTEYGNGGNKSGKNPEVVQPEVNVELDDEQ
PRSNASAFAESCQRLSISTGLSVTTESPLTSPSFAPVSNASSSMSNMNTE
LRFSQELSPSTHYQRAASETQCSNQNENAQQLAYLLQRSQSKPETPNPLQ
RQQSQIDPNNQSETRQPQHTQFLESQQLLTQQLAQLQQQDQMNSAQQQQS
VSQVLNSASLEKSLQFFQQSFQDQQNTIQGDTSDLQKFISKQILVHLQVL
QKHVLTQLVNVMQDKSQNLTNFSQVLPVLQQLQQLQQSILDQQSENREKT
PENMNAPEMGEQLLNAQQGAVGGETKTPEEANDPSRVFDGSCFKELNDIK
RTLAYNENSEQNNDCFPEVSSPDLQALLSGTDKCLNDGMEKLSDDPKKDP
KKVDETEELSYAQPFLENQQQLLQLQQYQRMQIYMQQRQQLEQLVQSQNG
SRDTVAPTQQQQQQQPQQQQAQQLQTQQLQNQQQNNPLLRPMANMPNLNE
FGDQQNQNLIDFGTFDTSWLSGENEEVLNMLLSENDHLWN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034109XLOC_034109Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054037TCONS_00054037Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000014PAS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 373..393
NoneNo IPR availableGENE3D3.30.450.20coord: 158..474
e-value: 3.8E-13
score: 48.8
NoneNo IPR availablePFAMPF14598PAS_11coord: 163..262
e-value: 2.1E-11
score: 43.9
IPR000014PAS domainPROSITEPS50112PAScoord: 174..220
score: 10.264
IPR000014PAS domainCDDcd00130PAScoord: 161..261
e-value: 6.1739E-5
score: 41.4647
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 161..259

Blast
[Close]
BLAST of TCONS_00054037-protein vs. Swiss-Prot (Human)
Match: CLOCK (Circadian locomoter output cycles protein kaput OS=Homo sapiens GN=CLOCK PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.019e-16
Identity = 47/184 (25.54%), Postives = 88/184 (47.83%), Query Frame = 0 
Query:  109 DSDRESSYRHLSCVGRWQSFKKLEES---GFLSKV-----------LILFATVKTE----MREIAPPEDAIPSFMTKQGLDLSFIFVDQNCPPVTGYTSYELLGKSLYMFVHVDDLPEIHSAHDNLTKNRCKEVQTFFRFCSKGEEWLLLKVVMQMKSSEGTMQPDFISMCFYMANQEEILAFR 274
            D    S+Y ++  +G ++S   +  S   GF   +           +   ATV+      ++E+   E+    F ++  L+  F+F+D   PP+ GY  +E+LG S Y + HVDDL  +   H++L +   K    ++RF +KG++W+ L+    +   +   +P+FI     + +  E+ A R
Sbjct:  203 DPKEPSTYEYVKFIGNFKSLNSVSSSAHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQ-YGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAER 385
The following BLAST results are available for this feature:
BLAST of TCONS_00054037-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLOCK1.019e-1625.54Circadian locomoter output cycles protein kaput OS... [more]
back to top