TCONS_00054066-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054066-protein
Unique NameTCONS_00054066-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054066-protein ID=TCONS_00054066-protein|Name=TCONS_00054066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
ERYCINTGVFREEHHSKKEFEKDFQGISKANSYKMNTLLALVVLCLAAVN
STKIEKCIRQNGGYSDWLKWSPCSVSCGKGTRSRHRYCDNPIPMYGGDKC
QGDDKETEECDMGPCPEKATLGEYEDIGKCSKPCGGGVQKRQRKCLPPIN
PYYKKCYVDCPKDRDEITEPCNTHKCKQEVGNECQGCKRQANYDAARNGK
PEFVGHACRTSNKFCEGRTKGIKAMYAQNDWFFLHCAPDGSWCKPCATRG
LVYNPECGNCEVKRSGVKCTDAGTWDKTRAQKDVLNDEELW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034122XLOC_034122Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054066TCONS_00054066Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 62..75
score: 46.05
coord: 80..91
score: 45.54
coord: 99..110
score: 35.79
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 64..116
e-value: 1.8E-16
score: 70.7
coord: 121..177
e-value: 2.1E-8
score: 43.9
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 126..176
e-value: 6.2E-7
score: 29.4
coord: 65..115
e-value: 6.6E-16
score: 58.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 60..115
e-value: 5.4E-17
score: 61.3
coord: 117..176
e-value: 2.0E-9
score: 37.1
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 118..177
score: 10.112
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 61..116
score: 13.88
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 57..115
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 114..176

Blast
[Close]
BLAST of TCONS_00054066-protein vs. Swiss-Prot (Human)
Match: TSP2 (Thrombospondin-2 OS=Homo sapiens GN=THBS2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.997e-19
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 0 
Query:   48 AVNSTKIEKCIRQNGGYSDWLKWSPCSVSCGKGTRSRHRYCDNPIPMYGGDKCQGDDKETEECDMGPCPEKATLGEYEDIGKCSKPCGGGVQKRQRKCLPPINPYYKKCYVDCPKDRDEITEPCNTHKC 176
            A + +K +  IRQ+GG+S W  WS CSV+CG G  +R R C++P+P  GG  C+G  +ET+ C   PCP       +     C+  C GG+++R R C  P   Y  K  V   ++R    + CN   C
Sbjct:  424 ACSLSKCDTRIRQDGGWSHWSPWSSCSVTCGVGNITRIRLCNSPVPQMGGKNCKGSGRETKACQGAPCPIDGRWSPWSPWSACTVTCAGGIRERTRVCNSPEPQYGGKACVGDVQER----QMCNKRSC 548
The following BLAST results are available for this feature:
BLAST of TCONS_00054066-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP26.997e-1936.43Thrombospondin-2 OS=Homo sapiens GN=THBS2 PE=1 SV=... [more]
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