TCONS_00054067-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054067-protein
Unique Name	TCONS_00054067-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1141

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054067-protein ID=TCONS_00054067-protein|Name=TCONS_00054067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1141bp
MFRLSNQSRTKYPSGKLINFMSTDADRSYQVVTYLVVSWSAPLLIIVSLL
SLFRLIGWSTLAGLVVILLSNPINYLSTQLVRKYNQQLVKFKDQRLKLMS
EIISGIKIIKMYAWEGSFMQKVTEIRKQELRFVRKSMILSASWDFSITCL
PFFVSLATFAVYVYIEKGVLTAEKAFVSITLFNIMRYPFSVVPIFISAVV
NYNISAKRISEFLNCEEFDSNGYIRLPGPCDASLNIEIHNGSFGWTPEDK
ALKDISLGVARGQLIAVVGQVGSGKSSLLSSILGELEKVCGSVKTYGKIA
YVSQQAWIQNKNLRQNVLFGKYYRNEAYKKILRACALETDIELLPASDLT
EIGEKGINLSGGQKQRVSLARAVYENADIYLFDDPLSAVDAHVGKHIFEN
IIGSNGLLKDKTRVLVTHGLSFLPHVDHICVIKDKTISQHGSFEKLLESN
GGFADILNQFAKASNDNDLEQSIEKEKSTLVDDDHDDEIYEEAPNHPVFQ
GQISLHSQGGILTTSGKNLYRVIDRMTDEQLFTDDVVEDEEDENETENEK
WKLIEQEKVETGNVKLTILMKYLKTIGILASLVIVTCGILQEASLVGSRF
WLAHWSSLSPITAKLHRNELISVYGLLGLAQGFFVLFLAIVLALASYRSS
KKLHFQLLDTILHCPISFFESTPSGRIMNRFTKDIGGLDSSIPTNLRTCL
VDGMGLLGVVYVISFATPLVMVAFIPIFVIYILTQRIYVKSSRQLKRIIS
INQSPIFNHFMESINGASTIRAFGKVDEFIDENHRRIDHLQRPFLANIMC
DRWMLIQIKMLGIFVALFTAIFCVMEKGNISPGILGLTVSYAIQMTQSLI
SLVRSSNGLEVNLVSIERINDYISKPREASITLQPSREVTPDWPQNGEIS
LVNYSVRYRPSMPLVLNSINITIRPQEKVGIVGRTGAGKSSITLALFRII
EASSGYISIDGVKISNVTLQELRSKISIIPQDPVLFSGSIRFNVDPFQRH
TDEQIWNALEISRLKKFVSTLSGGLDSEVQEGGDNLSVGQRQLICLARAL
LRMSKILIMDEATASVDMETDLFIQQTIRKEFTGCTILTIAHRLNTIMDY
DRILVMEKGEVAEFDSPKTLLADHTTIFYSMVKNAGLLGSI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034123	XLOC_034123	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054067	TCONS_00054067	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR003439	ABC_transporter-like
IPR011527	ABC1_TM_dom
IPR017871	ABC_transporter_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016887	ATPase activity
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..101
None	No IPR available	COILS	Coil	Coil	coord: 537..557
None	No IPR available	GENE3D	3.40.50.300		coord: 234..552 e-value: 2.9E-57 score: 193.9
None	No IPR available	GENE3D	1.20.1560.10		coord: 553..880 e-value: 6.2E-69 score: 231.8
None	No IPR available	GENE3D	3.40.50.300		coord: 881..1137 e-value: 1.2E-68 score: 230.7
None	No IPR available	GENE3D	1.20.1560.10		coord: 1..217 e-value: 1.6E-49 score: 168.3
None	No IPR available	CDD	cd03244	ABCC_MRP_domain2	coord: 897..1117 e-value: 2.89919E-131 score: 400.331
None	No IPR available	CDD	cd03250	ABCC_MRP_domain1	coord: 236..434 e-value: 5.58949E-91 score: 290.91
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 261..436 e-value: 4.1E-10 score: 49.6 coord: 925..1110 e-value: 7.3E-14 score: 62.1
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 252..386 e-value: 1.7E-20 score: 73.8 coord: 916..1064 e-value: 7.2E-29 score: 100.9
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 899..1133 score: 17.247
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 236..459 score: 22.622
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 1..189 e-value: 3.3E-23 score: 82.6 coord: 583..849 e-value: 3.8E-36 score: 125.0
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 1..201 score: 28.538
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 578..860 score: 35.09
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 2..217
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 610..878
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 359..373
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 1036..1050
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 232..458
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 889..1131

Blast

[Close]

BLAST of TCONS_00054067-protein vs. Swiss-Prot (Human)
Match: MRP1 (Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3)

HSP 1 Score: 1017.68 bits (2630), Expect = 0.000e+0
Identity = 523/1154 (45.32%), Postives = 754/1154 (65.34%), Query Frame = 0

Query:    4 LSNQSRTKYPSGKLINFMSTDADRSYQVVTYLVVSWSAPLLIIVSLLSLFRLIGWSTLAGLVVILLSNPINYLSTQLVRKYNQQLVKFKDQRLKLMSEIISGIKIIKMYAWEGSFMQKVTEIRKQELRFVRKSMILSASWDFSITCLPFFVSLATFAVYVYI-EKGVLTAEKAFVSITLFNIMRYPFSVVPIFISAVVNYNISAKRISEFLNCEEFDSNGYIRLPGPCDASLN-IEIHNGSFGWTPEDK-ALKDISLGVARGQLIAVVGQVGSGKSSLLSSILGELEKVCGSVKTYGKIAYVSQQAWIQNKNLRQNVLFGKYYRNEAYKKILRACALETDIELLPASDLTEIGEKGINLSGGQKQRVSLARAVYENADIYLFDDPLSAVDAHVGKHIFENIIGSNGLLKDKTRVLVTHGLSFLPHVDHICVIKDKTISQHGSFEKLLESNGGFADILNQFAKASNDNDLEQ------------SIEKEKSTLVDDDHDDEIYEEAPNHPVFQGQISLHSQGGILTTSGKNLYRVIDRMTDEQLFTDDVVEDEEDENETENEKWKLIEQEKVETGNVKLTILMKYLKTIGILASLVIVTCGILQEASLVGSRFWLAHWSSLSPIT--AKLHRNELISVYGLLGLAQGFFVLFLAIVLALASYRSSKKLHFQLLDTILHCPISFFESTPSGRIMNRFTKDIGGLDSSIPTNLRTCLVDGMGLLGVVYVISFATPLVMVAFIPIFVIYILTQRIYVKSSRQLKRIISINQSPIFNHFMESINGASTIRAFGKVDEFIDENHRRIDHLQRPFLANIMCDRWMLIQIKMLGIFVALFTAIFCVMEKGNISPGILGLTVSYAIQMTQSLISLVRSSNGLEVNLVSIERINDYISKPREASITLQPSREVTP--DWPQNGEISLVNYSVRYRPSMPLVLNSINITIRPQEKVGIVGRTGAGKSSITLALFRIIEASSGYISIDGVKISNVTLQELRSKISIIPQDPVLFSGSIRFNVDPFQRHTDEQIWNALEISRLKKFVSTLSGGLDSEVQEGGDNLSVGQRQLICLARALLRMSKILIMDEATASVDMETDLFIQQTIRKEFTGCTILTIAHRLNTIMDYDRILVMEKGEVAEFDSPKTLLADHTTIFYSMVKNAGLL 1138
            ++N +R     G+++N MS DA R   + TY+ + WSAPL +I++L  L+  +G S LAG+ V++L  P+N +     + Y    +K KD R+KLM+EI++GIK++K+YAWE +F  KV  IR++EL+ ++KS  LSA   F+  C PF V+L TFAVYV I E  +L A+ AFVS+ LFNI+R+P +++P+ IS++V  ++S KR+  FL+ EE + +   R P       N I + N +F W   D   L  I+  +  G L+AVVGQVG GKSSLLS++L E++KV G V   G +AYV QQAWIQN +LR+N+LFG       Y+ +++ACAL  D+E+LP+ D TEIGEKG+NLSGGQKQRVSLARAVY NADIYLFDDPLSAVDAHVGKHIFEN+IG  G+LK+KTR+LVTH +S+LP VD I V+    IS+ GS+++LL  +G FA+ L  +A    + D E+            + + E   LV D    ++  +  +   + G IS H                           +   E ++ E + E E WKL+E +K +TG VKL++   Y+K IG+  S + +   +    S + S +WL+ W+   PI    + H    +SVYG LG++QG  V   ++ +++    +S+ LH  LL +IL  P+SFFE TPSG ++NRF+K++  +DS IP  ++  +     ++G   VI  ATP+  +   P+ +IY   QR YV SSRQLKR+ S+++SP+++HF E++ G S IRAF + + FI ++  ++D  Q+ +  +I+ +RW+ ++++ +G  + LF A+F V+ + ++S G++GL+VSY++Q+T  L  LVR S+ +E N+V++ER+ +Y    +EA   +Q   E  P   WPQ G +   NY +RYR  +  VL  IN+TI   EKVGIVGRTGAGKSS+TL LFRI E++ G I IDG+ I+ + L +LR KI+IIPQDPVLFSGS+R N+DPF +++DE++W +LE++ LK FVS L   LD E  EGG+NLSVGQRQL+CLARALLR +KIL++DEATA+VD+ETD  IQ TIR +F  CT+LTIAHRLNTIMDY R++V++KGE+ E+ +P  LL     +FYSM K+AGL+
Sbjct:  410 ITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWLNLGPSVLAGVAVMVLMVPVNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLSAVGTFTWVCTPFLVALCTFAVYVTIDENNILDAQTAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRPVKDGGGTNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASTEQEQDAEENGVTGVSGPGKEAKQMENGMLVTDSAGKQLQRQLSSSSSYSGDISRHH--------------------------NSTAELQKAEAKKE-ETWKLMEADKAQTGQVKLSVYWDYMKAIGLFISFLSIFLFMCNHVSALASNYWLSLWTD-DPIVNGTQEHTKVRLSVYGALGISQGIAVFGYSMAVSIGGILASRCLHVDLLHSILRSPMSFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLFNVIGACIVILLATPIAAIIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQ---ETAPPSSWPQVGRVEFRNYCLRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEIQEYGAPSDLL-QQRGLFYSMAKDAGLV 1531

The following BLAST results are available for this feature:

BLAST of TCONS_00054067-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054067-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MRP1	0.000e+0	45.32	Multidrug resistance-associated protein 1 OS=Homo ...	[more]

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TCONS_00054067-protein (polypeptide) - C. hemisphaerica