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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00054086-protein ID=TCONS_00054086-protein|Name=TCONS_00054086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MYDNNSDDGSRPPSLPEKTFLRRRRSSHYAPLLDDLQQLDDRDRIASNGQ
QLSDEIDRLAAEVKRIKMESTPYPSKEEPSDRNSFPQRRHGLQSQRGNDQ
ADLKSFSAEESFIESIHKLTRPNVTKKDLPIFDGTESKSFKMFLQEFEDI
TKLGQWSDEDKLAALPTILEGRPKLYYHRLDPKKKKTYENAIKAIEKMFD
SPENICILRRELRNIQQGELPLVEYLERLEYLFTELSVPEDRHLDLLTGG
LREDLQDYLDLKEIKTYDSAVRSLKMKESVRRTKPVDARLTAICDKLSAI
EERLDEAPAVKAAVNNNQADVAALLREINRLKSQNRSGQRGYNRSNGYNQ
GNGYNQRGAYSQRNTYDQRNAQNCQNCGKQGHTEETCRSPRKRTVGDLLC
WNCGGKGHRARQCGQMSANVRCLEEAKGEGPLLAVTIGAFDIDALCDSGA
QKSVLSETFAKKLGLSITKSEEKARGIGGSYLHIIGHTQFEVEIAGRTFT
IKPMVLRDVTHQLLLGIDFLQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 49..69 |
| None | No IPR available | COILS | Coil | Coil | coord: 314..334 |
| None | No IPR available | GENE3D | 3.90.20.10 | | coord: 161..346
e-value: 6.0E-4
score: 19.1 |
| None | No IPR available | PFAM | PF13975 | gag-asp_proteas | coord: 434..521
e-value: 1.6E-9
score: 38.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 65..103 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 334..359 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..35 |
| None | No IPR available | CDD | cd00303 | retropepsin_like | coord: 435..521
e-value: 6.29196E-15
score: 69.6728 |
| IPR001878 | Zinc finger, CCHC-type | SMART | SM00343 | c2hcfinal6 | coord: 373..389
e-value: 0.14
score: 16.5
coord: 399..415
e-value: 0.0039
score: 26.1 |
| IPR001878 | Zinc finger, CCHC-type | GENE3D | 4.10.60.10 | | coord: 385..419
e-value: 7.3E-10
score: 38.2 |
| IPR001878 | Zinc finger, CCHC-type | PFAM | PF00098 | zf-CCHC | coord: 400..413
e-value: 2.8E-4
score: 20.7 |
| IPR001878 | Zinc finger, CCHC-type | GENE3D | 4.10.60.10 | | coord: 353..384
e-value: 0.015
score: 14.8 |
| IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 374..389
score: 8.927 |
| IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 400..413
score: 9.949 |
| IPR001878 | Zinc finger, CCHC-type | SUPERFAMILY | 57756 | Retrovirus zinc finger-like domains | coord: 363..416 |
| IPR005162 | Retrotransposon gag domain | PFAM | PF03732 | Retrotrans_gag | coord: 166..253
e-value: 4.6E-8
score: 33.2 |
| IPR021109 | Aspartic peptidase domain | GENE3D | 2.40.70.10 | | coord: 425..521
e-value: 6.9E-17
score: 61.2 |
| IPR021109 | Aspartic peptidase domain | SUPERFAMILY | 50630 | Acid proteases | coord: 429..521 |
| IPR001995 | Peptidase A2A, retrovirus, catalytic | PROSITE | PS50175 | ASP_PROT_RETROV | coord: 442..479
score: 9.517 |
Blast
The following BLAST results are available for this feature:
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