TCONS_00054088-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054088-protein
Unique Name	TCONS_00054088-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	457

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054088-protein ID=TCONS_00054088-protein|Name=TCONS_00054088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MYILFKNMDFFKINLHFAYYKFLWYKYKLLLAWDGSSTFSKCVVWLLSSG
TLALAYRFYVKSSNTNIEQNQDQIEAVSKRRKKGLPPGLFNEGNTCFINS
VLQAISSSSSARKWIYDIEYKESSVSLTTAPSLDILIKVLSNQCGNEDVY
SALDLMLSLASHGWVISNQQHDAYEFFQLLIATVNEEMEKVSADGKSFYL
IGEVNTASSHIMNRISQTLPSLQRSPSSYFATDPFKGSVANKLTCTKCSY
QSPIKFEKFGSLILSIQHASLQRGCTLESCFQKLIETEYLSDVVCEKCTK
ENNNCKVKTKFQKQTSLSKLPQCLCLQLQRTYYTNDGSTRKNAAFVRFPE
FLDVSPFRYSSKDSKSKINIPDKTTRPLLCGGSSNFSTKKSSAWSNWYRL
ISVVLHYGDAYDGHFAVFRRTPGDQQKWVYISDQQVKRVSKRTVFDSFAY
LLFYEKI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034138	XLOC_034138	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054088	TCONS_00054088	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR018200	USP_CS
IPR028889	USP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016579	protein deubiquitination
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.70.10		coord: 79..457 e-value: 4.6E-69 score: 232.2
None	No IPR available	CDD	cd02662	Peptidase_C19F	coord: 88..455 e-value: 1.89512E-50 score: 171.78
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 80..367 coord: 397..456
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 88..454 e-value: 1.4E-36 score: 126.2
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00972	USP_1	coord: 88..103
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00973	USP_2	coord: 398..415
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 87..457 score: 38.859

Blast

[Close]

BLAST of TCONS_00054088-protein vs. Swiss-Prot (Human)
Match: UBP30 (Ubiquitin carboxyl-terminal hydrolase 30 OS=Homo sapiens GN=USP30 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.505e-53
Identity = 132/444 (29.73%), Postives = 222/444 (50.00%), Query Frame = 0

Query:   79 KRRKKGLPPGLFNEGNTCFINSVLQAISSSSSARKWI------YDIEYKESSVSLTTAPSLDILIKVLSNQ-CGNEDVYSALDLMLSLASHGWVISN-QQHDAYEFFQLLIATVNEEMEKVSADGKSFYLIGEVNTASSHIMNRIS-QTLPSLQRSPSSYFATDPFKGSVANKLTCTKCSYQSPIKFEKFGSLILSIQHASLQRGCTLESCFQKLIETEYLSDVVCEKCTKEN-----NNCKV---KTKFQKQTSLSKLPQCLCLQLQRTYYTNDGSTRKNAAFVRFPEFLDVSPFRYS-------------SKDSKSKINIPDKTTRP-------------LLCGGSSNFSTKKS---------------SAWSNWYRLISVVLHYGDAYDGHFAVFRRTPGDQQ-------KWVYISDQQVKRVSKRTVFDSFAYLLFYEKI 457
            K+R+KGL PGL N GNTCF+NS+LQ +S+  +  +W+      Y  + KE       + +L  L+K LS Q   +++V  A  L+  L  + W IS+ ++ DA+E F ++ +++ +E ++        + +  +   S     +I+ +T  S   + + + +  PF G + + + C  C +QSP++F+ F SL LSI  A+     TL+ C    I +E + DVVC+ CTK       N  KV   +T F KQ  L KLPQCLC+ LQR  +++ G+  K    V+F EFL +  ++Y              +K+    + + D    P             +   G+ + S   +               S+ +  +RL++VV+H+GD + GHF  +RR+P   +       +W+++SD  V++ S + V  S AYLLFYE++
Sbjct:   60 KKRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLLHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDR-QPRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQSPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKVEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGHKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERV 502

The following BLAST results are available for this feature:

BLAST of TCONS_00054088-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054088-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBP30	1.505e-53	29.73	Ubiquitin carboxyl-terminal hydrolase 30 OS=Homo s...	[more]

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TCONS_00054088-protein (polypeptide) - C. hemisphaerica