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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00054159-protein ID=TCONS_00054159-protein|Name=Nucleolin|organism=Clytia hemisphaerica|type=polypeptide|length=608bp
MVKAKTKTIKAEEIPKSKKAKKVETDSDSSSEEEEEVKVAPKKNGKVNGT
TKKPVKKESSSEDSDSSEEEAKPAKKNGVANGKANGKKAPAKKESSSEES
SDEEEEKPKAKAAPSKKVAAKKESSSEEDSSDEEEEKPKAKAKAPAKKAP
AKKESSSEEDSSDEEEEKPKAKAKAPAKKAPAKKESSSEDSSDEEEEKPK
AKAKAPAKKVAAKKESSSEEDSSDEEEEKPKAKPAPAKKVAAKKESSSEE
DSDDEEEEKPKAKAKAPAKKKADSSSEAESSEEEEEKPAKKAPKRKKDSS
SEDESEEEEQPKKQKEEKKNLKRKADDLGDVNTPKKVKEATSLFIGGLSY
YTTEDGLRQFFADNEINLTNCRIITDRETGKSRGFGYADFDSQEEADKCY
KIEDTTLDERQLRFDASNSGAKTPGSGRGGRGDRRGGGFSANRSGGRGGR
GGFNRDNETPTKLLLVKNLSYDTYNESLMSKFSGANDARVVKDQDGNSRG
FAFVEYDSIDDAKAAHKRMSGKDVDGRSVTIVYATPREDFKPGSGRGGRG
GGFGSGGGRGGGRGRGGFGGGRGGRGGGRGGRGGSTPSNKGSIQKFEGSK
LTFDNDSD Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 463..532
e-value: 9.0E-14
score: 61.8
coord: 342..415
e-value: 3.2E-19
score: 79.9 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 343..412
e-value: 2.0E-13
score: 49.8
coord: 464..529
e-value: 1.5E-13
score: 50.3 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 462..536
score: 15.681 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 341..419
score: 15.477 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 331..451 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 457..566 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 266..427
e-value: 3.6E-23
score: 81.6 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 445..554
e-value: 3.1E-21
score: 75.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..336 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 535..608 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 411..459 |
Blast
The following BLAST results are available for this feature:
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