TCONS_00054207-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054207-protein
Unique NameTCONS_00054207-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054207-protein ID=TCONS_00054207-protein|Name=TCONS_00054207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
RSCMFDGEPCDPGDFLEVVSAHYGLCYQYNSIYLDKEPFKVSRGGEGAGL
RLYMAIPEDEFLVSRVPFNGLQIFVHPYGEPFESAIAKRVAISPGTMQFI
HVEYRKSELLEDPYPSKCSTKEYDLVKKFVPYSQSMCSMDCLMKEMLQDC
GCIPAEFAHHYDGGSKPCRFRQIECIGPKLANADNLVHRCRRDCPKECTS
IQYGISVGQTNMGNSKIISKLSKKYNWTHDEARHFMRENIFGIDVSYTDV
VYMMESLSPAQNWISLLNAIGGGLGLCMGCSLITFIEFLVFGIQSIYLYV
TSKCKGNCQSQVENDNSEKDMKNKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034192XLOC_034192Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054207TCONS_00054207Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001873Epithelial sodium channelPRINTSPR01078AMINACHANNELcoord: 45..63
score: 28.63
coord: 132..143
score: 29.67
coord: 257..271
score: 34.13
coord: 143..160
score: 21.78
coord: 194..214
score: 18.67
coord: 271..287
score: 46.12
coord: 14..30
score: 35.29
IPR001873Epithelial sodium channelPFAMPF00858ASCcoord: 2..291
e-value: 3.4E-48
score: 164.6
NoneNo IPR availableGENE3D1.10.287.770coord: 210..297
e-value: 9.4E-12
score: 44.6
NoneNo IPR availableGENE3D2.60.470.10coord: 1..160
e-value: 1.5E-27
score: 96.3

Blast
[Close]
BLAST of TCONS_00054207-protein vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.583e-26
Identity = 91/329 (27.66%), Postives = 151/329 (45.90%), Query Frame = 0 
Query:    2 SCMFDGEPCDPGDFLEVVSAHYGLCYQYNSIYLDKEPFKVSRGGEGAGLRLYMAIPEDEFL-----VSRVPFN-GLQIFVHPYGE-PFESAIAKRVAISPGTMQFIHVEYRKSELLEDPYPS-KCSTKEYDLVKKFVPYSQSMCSMDCLMKEMLQDCGCIPAEFAHHYDGGSKPCRFRQI-ECIGPKLANADNLVHRCRRDCPKE--CTSIQYGISVGQTNMGNSKIISKLSKKYNWTHDEARHFMRENIFGIDVSYTDVVYMMESLSPAQNWISLLNAIGGGLGLCMGCSLITFIEFLVFGIQSIYLYVTSKCKGNCQSQVENDNSEK 319
            SC F GE C   DF +VV   YG CY +NS    +   K  +GG G GL + + I +DE+L          F  G+++ +H   E PF   +     ++PG   F+  + ++   L  P+ + K  T + DL   F  YS + C +DC  + ++++C C       H  G +  C   Q  EC  P L   D LV + +  C  E  C   +YG  +    + +      L+KK+N    ++  ++ ENI  +D+ +  + Y       A     LL  IGG +GL +G S++T +E   +  + I   +    +G CQ + +  +++K
Sbjct:  171 SCHFRGEVCSAEDF-KVVFTRYGKCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLG--FGVAPGFQTFVACQEQRLIYLPPPWGTCKAVTMDSDL-DFFDSYSITACRIDCETRYLVENCNCRMV----HMPGDAPYCTPEQYKECADPAL---DFLVEKDQEYCVCEMPCNLTRYGKELSMVKIPSKASAKYLAKKFN----KSEQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFDYAYEVIKHKLCR--RGKCQKEAKRSSADK 482
The following BLAST results are available for this feature:
BLAST of TCONS_00054207-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC13.583e-2627.66Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC... [more]
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