TCONS_00054234-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054234-protein
Unique NameTCONS_00054234-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054234-protein ID=TCONS_00054234-protein|Name=TCONS_00054234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
RRLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVADTLQELWI
SYNNIEKLKGIGVLKKLQVLYMSNNQVKAWDEFQKLGELPNLADLLFVGN
PLEEKHNTEGDWRDLATTKLPKLKKLDGVPVVRQDEEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034210XLOC_034210Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054234TCONS_00054234Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025875Leu-rich_rpt_4
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 1..18
e-value: 560.0
score: 1.3
coord: 64..85
e-value: 13.0
score: 14.8
coord: 19..40
e-value: 0.62
score: 19.1
coord: 42..63
e-value: 42.0
score: 10.4
IPR025875Leucine rich repeat 4PFAMPF12799LRR_4coord: 45..83
e-value: 3.2E-6
score: 27.3
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 1..138
e-value: 9.5E-28
score: 96.0
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 2..133
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 21..42
score: 7.812
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 66..87
score: 6.834
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 44..65
score: 8.028
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1..20
score: 7.365

Blast
[Close]
BLAST of TCONS_00054234-protein vs. Swiss-Prot (Human)
Match: DNAL1 (Dynein light chain 1, axonemal OS=Homo sapiens GN=DNAL1 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.580e-71
Identity = 105/137 (76.64%), Postives = 120/137 (87.59%), Query Frame = 0 
Query:    2 RLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVADTLQELWISYNNIEKLKGIGVLKKLQVLYMSNNQVKAWDEFQKLGELPNLADLLFVGNPLEEKHNTEGDWRDLATTKLPKLKKLDGVPVVRQDEEE 138
            +LSLSTNCIEKIANLNGLKNL+ILSLGRNNIKNLNGLEAV DTL+ELWISYN IEKLKGI ++KKL++LYMSNN VK W EF KL ELP L DL+FVGNPLEEKH+ E +W + AT ++PKLKKLDG PV++ DEEE
Sbjct:   52 KLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGDEEE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00054234-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAL11.580e-7176.64Dynein light chain 1, axonemal OS=Homo sapiens GN=... [more]
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