TCONS_00054246-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054246-protein
Unique NameTCONS_00054246-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054246-protein ID=TCONS_00054246-protein|Name=TCONS_00054246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MRLSLVLIASALVVAVSAGCHQDKSQFCSGWKLVGYCKRSSKHHTWMKEH
CADTCDFPCPTTQPPTSGCADKNEAYCKKYALYCFRDGWKNYLKVQCPKT
CKACGGAATTPQGPLPTQASGQCGVKSDGHTRIVGGTNARPGDWPWQVQI
DLNTDWGRYWCGGTLINDEWIVSAAHCFEDDTRARNYDIYLGEHDIRSKS
GNEQKMEVAEIIMHPGYKYGDVDNDMALIRLKKKASFNTYVRPACFPDSS
VKFPSGEECYVTGWGALRTGGSSPRILQQAKIPLVPQHECQRAMGSDITK
NMFCAGYANKRIDSCQGDSGGPLVCKKRTSTGQDVWYLWGVVSWGIDCAS
PGYYGVYSSIENMGSWVTNTLKSRRT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034219XLOC_034219Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054246TCONS_00054246Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR003582ShKT_dom
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001314Peptidase S1A, chymotrypsin familyPRINTSPR00722CHYMOTRYPSINcoord: 162..177
score: 54.4
coord: 221..235
score: 36.19
coord: 312..324
score: 72.07
IPR003582ShKT domainSMARTSM00254ShkT_1coord: 19..60
e-value: 2.8
score: 16.3
coord: 68..105
e-value: 0.022
score: 23.9
IPR003582ShKT domainPFAMPF01549ShKcoord: 20..57
e-value: 3.5E-5
score: 24.1
coord: 68..104
e-value: 5.6E-4
score: 20.3
IPR003582ShKT domainPROSITEPS51670SHKTcoord: 69..104
score: 8.155
IPR003582ShKT domainPROSITEPS51670SHKTcoord: 20..59
score: 7.688
IPR001254Serine proteases, trypsin domainSMARTSM00020trypsin_2coord: 132..367
e-value: 9.3E-91
score: 317.5
IPR001254Serine proteases, trypsin domainPFAMPF00089Trypsincoord: 133..367
e-value: 1.8E-75
score: 253.5
IPR001254Serine proteases, trypsin domainPROSITEPS50240TRYPSIN_DOMcoord: 133..372
score: 39.037
IPR001254Serine proteases, trypsin domainCDDcd00190Tryp_SPccoord: 133..370
e-value: 9.38414E-100
score: 297.266
NoneNo IPR availablePIRSFPIRSF001143Coagul_factor_Xcoord: 13..376
e-value: 3.3E-71
score: 238.0
NoneNo IPR availableGENE3D2.40.10.10coord: 242..374
e-value: 7.9E-47
score: 158.4
NoneNo IPR availableGENE3D2.40.10.10coord: 167..241
e-value: 1.7E-31
score: 107.6
NoneNo IPR availableGENE3D2.40.10.10coord: 132..143
e-value: 3.8E-7
score: 29.2
NoneNo IPR availableGENE3D2.40.10.10coord: 144..166
e-value: 2.0E-18
score: 65.7
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0
IPR018114Serine proteases, trypsin family, histidine active sitePROSITEPS00134TRYPSIN_HIScoord: 172..177
IPR033116Serine proteases, trypsin family, serine active sitePROSITEPS00135TRYPSIN_SERcoord: 313..324
IPR009003Peptidase S1, PA clanSUPERFAMILY50494Trypsin-like serine proteasescoord: 114..372

Blast
[Close]
BLAST of TCONS_00054246-protein vs. Swiss-Prot (Human)
Match: TMPS6 (Transmembrane protease serine 6 OS=Homo sapiens GN=TMPRSS6 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 3.111e-58
Identity = 99/251 (39.44%), Postives = 146/251 (58.17%), Query Frame = 0 
Query:  123 CGVKSDGHTRIVGGTNARPGDWPWQVQIDLNTDWGRYWCGGTLINDEWIVSAAHCFEDDTRARN--YDIYLGEHDIRSKSGNEQKMEVAEIIMHPGYKYGDVDNDMALIRLKKKASFNTYVRPACFPDSSVKFPSGEECYVTGWGALRTGGSSPRILQQAKIPLVPQHECQRAMGSDITKNMFCAGYANKRIDSCQGDSGGPLVCKKRTSTGQDVWYLWGVVSWGIDCASPGYYGVYSSIENMGSWVTNTL 371
            CG++    +RIVGG  +  G+WPWQ  + +    GR+ CGG LI D W+++AAHCF++D+ A    + ++LG+    S+   E   +V+ +++HP ++    D D+AL++L      +  VRP C P  S  F  G  C++TGWGALR GG     LQ+  + L+PQ  C       +T  M CAGY   + D+CQGDSGGPLVCK  +      W+L G+VSWG+ C  P Y+GVY+ I  + SW+   +
Sbjct:  568 CGLQGPS-SRIVGGAVSSEGEWPWQASLQVR---GRHICGGALIADRWVITAAHCFQEDSMASTVLWTVFLGKVWQNSRWPGEVSFKVSRLLLHPYHEEDSHDYDVALLQLDHPVVRSAAVRPVCLPARSHFFEPGLHCWITGWGALREGGPISNALQKVDVQLIPQDLCSEVYRYQVTPRMLCAGYRKGKKDACQGDSGGPLVCKALSGR----WFLAGLVSWGLGCGRPNYFGVYTRITGVISWIQQVV 810
The following BLAST results are available for this feature:
BLAST of TCONS_00054246-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMPS63.111e-5839.44Transmembrane protease serine 6 OS=Homo sapiens GN... [more]
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