TCONS_00054312-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054312-protein
Unique NameTCONS_00054312-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054312-protein ID=TCONS_00054312-protein|Name=TCONS_00054312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MATNKVDLKRDSLKFLYETPSKTEVKTNAQLLEEYLKENAINSNHSDIEK
LKERLRFKPLLLEKSLVGNKDKKKRIEKRKNTKLGRVAIKKLNLYKISKD
EQKYDSFLPLHNLWKNYVRNLFLHKNGKVMIRAEERVLKIDYHGAKIEVK
KCKCESFVGISGIIVKETKNMFEIITQQNELKALPKRETLFEFLIHGHKI
SIYGNAIVGRPGERMVKRFKNTYESDMILDNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034249XLOC_034249Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054312TCONS_00054312Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002730RNase_P/MRP_p29
IPR016848RNase_P/MRP_p29-subunit
IPR023538RNP1
IPR023534Rof/RNase_P-like
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0006364rRNA processing
GO:0006379mRNA cleavage
GO:0001682tRNA 5'-leader removal
Vocabulary: Cellular Component
TermDefinition
GO:0030677ribonuclease P complex
GO:0000172ribonuclease MRP complex
GO:0005655nucleolar ribonuclease P complex
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
GO:0003723RNA binding
GO:0004526ribonuclease P activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006364 rRNA processing
biological_process GO:0001682 tRNA 5'-leader removal
biological_process GO:0008033 tRNA processing
cellular_component GO:0005655 nucleolar ribonuclease P complex
cellular_component GO:0000172 ribonuclease MRP complex
cellular_component GO:0030677 ribonuclease P complex
molecular_function GO:0004540 ribonuclease activity
molecular_function GO:0004526 ribonuclease P activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002730Ribonuclease P/MRP, subunit p29SMARTSM00538pop4_2coord: 131..222
e-value: 3.8E-25
score: 99.6
IPR002730Ribonuclease P/MRP, subunit p29PFAMPF01868UPF0086coord: 136..216
e-value: 2.6E-25
score: 88.0
IPR002730Ribonuclease P/MRP, subunit p29GENE3D2.30.30.210coord: 132..221
e-value: 7.8E-27
score: 92.2
IPR016848Ribonuclease P/MRP, p29 subunitPIRSFPIRSF027081RPP29coord: 3..228
e-value: 1.7E-45
score: 153.7
IPR023538Ribonuclease P protein component 1HAMAPMF_00754RNase_P_1coord: 139..216
score: 13.157
IPR023534Rof/RNase P-likeSUPERFAMILY101744Rof/RNase P subunit-likecoord: 135..226

Blast
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BLAST of TCONS_00054312-protein vs. Swiss-Prot (Human)
Match: RPP29 (Ribonuclease P protein subunit p29 OS=Homo sapiens GN=POP4 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-30
Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 0 
Query:   90 KKLNLYKISKDEQKYDSFLPLHNLWKNYVRNL---FLHKNGKVMIRAEERVLKIDYHGAKIEVKKCKCESFVGISGIIVKETKNMFEIITQQNELKALPKRETLFEFLIHGHKISIYGNAIVGRPGERMVKRFK 220
            ++L L+ I  ++Q+Y  FLPLH LWK Y+R+L           MI+A  ++LK D HGA I V K KC S+VGI+GI+++ETK++F+IIT+++ LK +PK   +F     G    IYG+    R  ER  K+FK
Sbjct:   82 RELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQA--KLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRSSERSAKKFK 213
The following BLAST results are available for this feature:
BLAST of TCONS_00054312-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPP293.357e-3043.28Ribonuclease P protein subunit p29 OS=Homo sapiens... [more]
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