TCONS_00054352-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054352-protein
Unique Name	TCONS_00054352-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	495

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054352-protein ID=TCONS_00054352-protein|Name=TCONS_00054352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
MGNQKGRAKLRQKWKDLYSSCSFDGFHYIFDERGFLRIFWLIIVLAATAL
AIVLFYGVIEEYYDYTTSTTIEEILTNSQVEFPTVTICNFNAVSKKKIEK
SSYNSTVEEIVEFYQSIKEGRFNKSNGHKVLDELRANDGVNSFGAVLKHF
ENTFEELIEDPMLKDIEPKPCLFKGQECTKAEFTEIVSAQYGLCYQFNSI
YLEKNRLYANEAGEGAGLRLILNIDEEDLLVSNVPFTGLQVFVHPFGEPF
ESAIAKRVAISPGSMNFIHIDYRQWELLKEPYQSKCDEKSFHLVNKIVPY
SQSMCSVDGAMKKMMDKCGCVAEEFVHHLDDKEKVCGIDKVECIDKMIVE
IDDIIHEYRKDCPRQCLTTKYLISVGETTMGNTKFFKMMKEKHNKTLTDA
HTFVKRNVFGIDVSFTDIVYLKETMSPTQTWITVLSTIGGSLGLAMGCSI
VTFIEFIVFGLQALYWYCKPNDDNNSSAKDTVKNGHAVTNAESNA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034272	XLOC_034272	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054352	TCONS_00054352	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 37..54 score: 22.67 coord: 362..382 score: 19.05 coord: 168..179 score: 33.0 coord: 182..198 score: 40.94 coord: 425..439 score: 31.2 coord: 439..455 score: 46.12 coord: 311..328 score: 22.0 coord: 213..231 score: 33.68 coord: 78..94 score: 40.24
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 20..459 e-value: 1.5E-69 score: 235.0
None	No IPR available	GENE3D	1.10.287.770		coord: 378..465 e-value: 8.4E-13 score: 48.0
None	No IPR available	GENE3D	2.60.470.10		coord: 68..326 e-value: 9.5E-33 score: 113.3

Blast

[Close]

BLAST of TCONS_00054352-protein vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 5.914e-26
Identity = 115/488 (23.57%), Postives = 214/488 (43.85%), Query Frame = 0

Query:   19 SSCSFDGFHYIFD-ERGFL-RIFWLIIVLAATALAIVLFYGVIEEYYDYTTSTTIEEILTNSQVEFPTVTICNFNAVSKKKIEKSS-YNSTVEEIVEFYQSIKEGRFNKSNGHKVLDELRANDGVNSFGAV---LKHFENTFEELIEDPMLKDIEPKPCLFKGQECTKAEFTEIVSAQYGLCYQFNSIYLEKNRLYANEAGEGAGLRLILNIDEEDLL-----VSNVPF-TGLQVFVHPFGEP-FESAIAKRVAISPGSMNFIHIDYRQWELLKEPYQSKCDEKSFHL-VNKIVPYSQSMCSVDGAMKKMMDKCGCVAEEFVHHLDDKEKVCGIDKVECIDKMIVEIDDIIHEYRKDCPRQCLTTKYLISVGETTMGNTKFFKMMKEKHNKTLTDAHTFVKRNVFGIDVSFTDIVYLKETMSPTQTW--ITVLSTIGGSLGLAMGCSIVTFIEFIVFGLQAL-YWYCKPNDDNNSSAKDTVKNGHAVT 489
            SS +  G  +IF  ER  L R  W +  L + A+ + +    ++ Y+ Y   T ++E+   SQ+ FP VT+CN N     ++ K+  Y++   E++    +  E    +    K L+ L+      SF      ++ F +     I D +L       C F+G+ C+  +F ++V  +YG CY FNS    + RL   + G G GL ++L+I +++ L          F  G++V +H   EP F   +     ++PG   F+    ++   L  P+ + C   +    ++    YS + C +D   + +++ C C     VH   D          EC D  +  + +   EY   C   C  T+Y   +    + +    K + +K NK+      ++  N+  +D+ F  + Y  ET+   + +    +L  IGG +GL +G SI+T +E   +  + + +  C+       + + +   G A++
Sbjct:   23 SSSTLHGLAHIFSYERLSLKRALWALCFLGSLAVLLCVCTERVQYYFHYHHVTKLDEV-AASQLTFPAVTLCNLNEFRFSQVSKNDLYHAG--ELLALLNNRYEIPDTQMADEKQLEILQDKANFRSFKPKPFNMREFYDRAGHDIRDMLLS------CHFRGEVCSAEDF-KVVFTRYGKCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLG--FGVAPGFQTFVACQEQRLIYLPPPWGT-CKAVTMDSDLDFFDSYSITACRIDCETRYLVENCNC---RMVHMPGDAPYCTPEQYKECADPALDFLVEKDQEYCV-CEMPCNLTRYGKELSMVKIPSKASAKYLAKKFNKS----EQYIGENILVLDIFFEVLNY--ETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFDYAYEVIKHKLCRRGKCQKEAKRSSADKGVALS 487

The following BLAST results are available for this feature:

BLAST of TCONS_00054352-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054352-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC1	5.914e-26	23.57	Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC...	[more]

You are here

TCONS_00054352-protein (polypeptide) - C. hemisphaerica