TCONS_00054380-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054380-protein
Unique NameTCONS_00054380-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054380-protein ID=TCONS_00054380-protein|Name=TCONS_00054380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MRSNGESESSENGEAILEHKNGVSSNDTPEKFAALKERNREKITRKRLNK
FDEEVVRVIGQHLEKLGLHKTVECLLKESNCQLENSSASRFRAHCLKGDW
NKAECVLKDLQPLLTTQDCYLKMRFLILEQKFLELLEDGRAIEALHCLRQ
ELTPLKYNVERIHELSGLLMSADIDELLKKSNWEGKTNGTRQHLINKLQA
YLPPTVMLPPDRLETLIKQAFEHQKTNCLYHNSTLDQNLHSLSILSDHKC
TRNMFPTETRQILSEHCDEVWFLRFSHDGKYLATGSKDTTVILWKVEDDT
LVKWRTLEGHSYGVSYISWSPNDTYIIACGPEDCCELWIWQVETGELKCR
MSHSTEESLTCCAWYSDEKRFVTGGTRGQFYQCDLDGNILESWEGVRVVG
LHVLNDRSVLAADTHMRIRSYNFDALVDKLLIQETHPIMSFVVSEDKTKA
LFNIASQGVNLWDIKDKVLIRKFRGVKQGYYMIHTCFGGLNNDFIASGSE
DNQVYIWHHSRETPITTLNGHSQTVNCVHWNPTDPSMLASASDDGTVRIW
RPAKDPSKACSTSDCFDFLTSSHGSQSSRSTSDESASSSQSSSRRSSSST
SPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034282XLOC_034282Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054380TCONS_00054380Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR006595CTLH_C
IPR006594LisH
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 495..509
score: 34.4
coord: 538..552
score: 38.27
coord: 282..296
score: 36.98
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 256..295
e-value: 6.7E-8
score: 42.2
coord: 300..341
e-value: 0.011
score: 25.0
coord: 344..384
e-value: 4.5
score: 12.9
coord: 466..508
e-value: 2.4
score: 14.5
coord: 511..551
e-value: 2.6E-12
score: 56.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 305..334
e-value: 0.12
score: 13.2
coord: 261..295
e-value: 4.3E-6
score: 27.3
coord: 513..550
e-value: 4.2E-8
score: 33.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 518..550
score: 14.719
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 263..304
score: 13.082
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 307..338
score: 9.439
IPR006595CTLH, C-terminal LisH motifSMARTSM00668ctlhcoord: 84..143
e-value: 6.2E-5
score: 32.4
IPR006595CTLH, C-terminal LisH motifPROSITEPS50897CTLHcoord: 84..143
score: 9.982
NoneNo IPR availableGENE3D1.10.10.670coord: 346..397
e-value: 5.6E-4
score: 19.2
coord: 296..345
e-value: 1.2E-12
score: 47.1
NoneNo IPR availableGENE3D2.140.10.30coord: 398..496
e-value: 9.2E-7
score: 27.8
NoneNo IPR availableGENE3D2.80.10.50coord: 523..599
e-value: 7.4E-11
score: 41.8
coord: 497..522
e-value: 1.5E-7
score: 31.0
NoneNo IPR availableGENE3D2.40.10.120coord: 254..295
e-value: 6.2E-12
score: 44.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 571..603
NoneNo IPR availableCDDcd00200WD40coord: 260..551
e-value: 3.91099E-39
score: 144.015
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 51..83
score: 9.015
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 263..560
score: 21.357
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 253..550

Blast
[Close]
BLAST of TCONS_00054380-protein vs. Swiss-Prot (Human)
Match: WDR26 (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 322/560 (57.50%), Postives = 423/560 (75.54%), Query Frame = 0 
Query:   29 PEKFAALKERNREKITRKRLNKFDEEVVRVIGQHLEKLGLHKTVECLLKESNCQLENSSASRFRAHCLKGDWNKAECVLKDLQPLL----------------TTQDCYLKMRFLILEQKFLELLEDGRAIEALHCLRQELTPLKYNVERIHELSGLLMSADIDELLKKSNWEGKTNGTRQHLINKLQAYLPPTVMLPPDRLETLIKQAFEHQKTNCLYHNSTLDQNLHSLSILSDHKCTRNMFPTETRQILSEHCDEVWFLRFSHDGKYLATGSKDTTVILWKVEDD--TLVKWRTLEGHSYGVSYISWSPNDTYIIACGPEDCCELWIWQVETGELKCRMSHSTEESLTCCAWYSDEKRFVTGGTRGQFYQCDLDGNILESWEGVRVVGLHVLND-RSVLAADTHMRIRSYNFDALVDKLLIQETHPIMSFVVSEDKTKALFNIASQGVNLWDIKDKVLIRKFRGVKQGYYMIHTCFGGLNNDFIASGSEDNQVYIWHHSRETPITTLNGHSQTVNCVHWNPTDPSMLASASDDGTVRIWRPA-----KDPSKACSTSD 564
            PE  ++LK++       KRL++ DE+V+R+IGQHL  LGL++TV+ L++ES C+LE+ SA++FR H ++GDW+KAE  L +L+PL+                T     ++M+FL+L+QK+LE LEDG+ +EAL  LR ELTPLKYN ERIH LSG LM +  ++L  K+ WEGK   +R  L++KLQ YLPP+VMLPP RL+TL++QA E Q+  CLYHN+ LD NL S+S+L DH C+R  FP  T+QIL+EHC+EVWF +FS+DG  LATGSKDTTVI+W+V+ D   L   +TLEGH+YGVSYI+WSP+D Y++ACGP+DC ELW+W V+TGEL+ +MS S E+SLT  AW  D KRFVTGG RGQFYQCDLDGN+L+SWEGVRV  L  L+D ++VLA+DTH RIR YNF+ L D+ ++QE HPIMSF +S++   AL N+A+QGV+LWD++D+VL+RK++GV QG+Y IH+CFGG N DFIASGSED++VYIWH   E PI  L GH++TVNCV WNP  PSM+ASASDDGTVRIW PA     ++  + CS+ D
Sbjct:  108 PELGSSLKKK-------KRLSQSDEDVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMD 660
The following BLAST results are available for this feature:
BLAST of TCONS_00054380-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR260.000e+057.50WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
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