TCONS_00054381-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054381-protein
Unique Name	TCONS_00054381-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	422

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054381-protein ID=TCONS_00054381-protein|Name=TCONS_00054381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MAEEVVVPEKNDQIQDKNAENTPNSTNDMSIIVNTSAVSEEKTDGDFKYG
FTLPDLYKIGLEFYKKEKDTLTLSYGDKIQLVALWKQVSCGRYSDSKLPD
IGYFDVIGNDRRKAWEALGDTAPDVAKERFCEILEKNTQTFVPFVEARKR
LIEAEIERKRKEEEERLRREEEERRRKEEADRIRKEEEERIRLALEAERL
RIKEEEEKKRVEQENANKTEQQTPSETTKLAPTLVNGDSNGRNIAPASLW
TRPKLQEFINHVKRDASSVIVVGRGETVTIRVPTHENGSCLFWEFATESY
DVGFGVFFEWSKKQQSSTQNDFSIKSNESDNDDTTKTATNNEDKSSVEVN
NDPTIISENERNIEIKNSDQDEILPVLRRNSQEEVIVGSHMYPGQGVYLL
KFDNSYSLLRSKTLYYRVYYTK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034283	XLOC_034283	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054381	TCONS_00054381	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009038	GOLD_dom
IPR014352	FERM/acyl-CoA-bd_prot_3-hlx
IPR000582	Acyl-CoA-binding_protein

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0000062	fatty-acyl-CoA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0000062	fatty-acyl-CoA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 144..223
None	No IPR available	GENE3D	2.60.120.680		coord: 265..419 e-value: 3.8E-29 score: 100.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..349
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
IPR009038	GOLD domain	PFAM	PF13897	GOLD_2	coord: 272..421 e-value: 2.0E-57 score: 193.4
IPR009038	GOLD domain	PROSITE	PS50866	GOLD	coord: 252..420 score: 12.552
IPR009038	GOLD domain	SUPERFAMILY	101576	Supernatant protein factor (SPF), C-terminal domain	coord: 265..312 coord: 362..421
IPR014352	FERM/acyl-CoA-binding protein, 3-helical bundle	GENE3D	1.20.80.10		coord: 50..171 e-value: 3.7E-11 score: 42.4
IPR000582	Acyl-CoA-binding protein, ACBP	PFAM	PF00887	ACBP	coord: 62..136 e-value: 1.5E-9 score: 37.8
IPR000582	Acyl-CoA-binding protein, ACBP	PROSITE	PS51228	ACB_2	coord: 53..143 score: 15.491
IPR000582	Acyl-CoA-binding protein, ACBP	SUPERFAMILY	47027	Acyl-CoA binding protein	coord: 53..140

Blast

[Close]

BLAST of TCONS_00054381-protein vs. Swiss-Prot (Human)
Match: GCP60 (Golgi resident protein GCP60 OS=Homo sapiens GN=ACBD3 PE=1 SV=4)

HSP 1 Score: 178.718 bits (452), Expect = 1.136e-50
Identity = 88/179 (49.16%), Postives = 118/179 (65.92%), Query Frame = 0

Query:  244 IAPASLWTRPKLQEFINHVKRDASSVIVVGRGETVTIRVPTHENGSCLFWEFATESYDVGFGVFFEWSKKQQSSTQNDFSIKSNESDNDDTTKTATNNEDKSSVEVNNDPTIISENERNIEIKNSDQDEILPVLRRNSQEEVIVGSHMYPGQGVYLLKFDNSYSLLRSKTLYYRVYYTK 422
            IA  S+WTRP++++F   +++DA SVI VGRGE VT+RVPTHE GS LFWEFAT++YD+GFGV+FEW+    ++     S  S++ + ++          K++    N P +               DEI+PV RR+  EEV  GSH YPG+GVYLLKFDNSYSL RSK++YYRVYYT+
Sbjct:  369 IAAPSMWTRPQIKDFKEKIQQDADSVITVGRGEVVTVRVPTHEEGSYLFWEFATDNYDIGFGVYFEWTDSPNTAVSVHVSESSDDDEEEEENIGCEEKAKKNA----NKPLL---------------DEIVPVYRRDCHEEVYAGSHQYPGRGVYLLKFDNSYSLWRSKSVYYRVYYTR 528

HSP 2 Score: 86.2705 bits (212), Expect = 3.670e-18
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 0

Query:   48 KYGFTLPDLYKIGLEFYK-KEKDTLTLSYGDKIQLVALWKQVSCGRYSDSKLPDIGYFDVIGNDRRKAWEALGDTAPDVAKERFCEILEKNTQTFVPFVEARK 149
            ++GF L +LY + L F+K K+      +Y +K++LVAL KQV  G Y+    P++G+FDV+GNDRR+ W ALG+ + + A   F ++L +    F  +V + K
Sbjct:   78 RWGFGLEELYGLALRFFKEKDGKAFHPTYEEKLKLVALHKQVLMGPYNPDTCPEVGFFDVLGNDRRREWAALGNMSKEDAMVEFVKLLNRCCHLFSTYVASHK 180

The following BLAST results are available for this feature:

BLAST of TCONS_00054381-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054381-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GCP60	1.136e-50	49.16	Golgi resident protein GCP60 OS=Homo sapiens GN=AC...	[more]

You are here

TCONS_00054381-protein (polypeptide) - C. hemisphaerica