TCONS_00054392-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054392-protein
Unique Name	TCONS_00054392-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	871

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054392-protein ID=TCONS_00054392-protein|Name=TCONS_00054392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=871bp
MSQKTQAASFGGNKRKNSGGGSYFVDRAFLPRIKEYLEVREGPHEADDVV
DYLQNRFHEYNRKKRTVLRLSVERALVTLLTKPKPDGDTPKLDSLEENYL
RKRQKRSNSQEQENDDVDSDDSLGSMDEELVLFKDTNAMNNSMQNMYKNV
SKTPKGNNEVQVTKVVNSAESQKRQPPSTSEQNTTNKVQQQQDQNANPVA
ITPYENVNKSHSKRNLNVISEDDRMSSRPSTPITKSASRKKAEGTKERSR
KFDQSVSTTTFKDIGGYENAIAEISKLILHLKHPEVFKHLGVKPPCGFLL
HGAPGCGKTLLANAIAGELKVPFFKIAAPEVVSGISGESEQKIRGLFNEA
RMLAPCLIFIDEIDCITPKRETAGKEMERRVVTQILTCMDELASTDAHVL
VIGATNRVDALDPALRRAGRFDREISLGIPDSKARRSILKVLCRDLRLEE
SFNFDKVASQTPGFVGADIQALVREAAILAVDSAFNMIKEKEKVAVKLFT
DEQNAPSPSADQPIKTQAESSDSQQQTSSIAWLRDQPPLTNEQLKGLFIT
SEHFEKALPFVQPSAKREGFATVPDVTWNDIGALEDIRDELKMAIMAPVE
NPEEFEALGLTVPPGILLAGPPGCGKTLLAKAIANEAGINFISVKGPELL
NMYVGESEKAVRQVFLRARNSSPCVIFFDEIDALCPRRSQTGDSSVSSRV
VNQLLTEMDGLETRKHVYIMGATNRPDILDNAILRPGRLDKLLYVGLPEP
DDRYKILQTITKNGTKPLMDKTLSIQDLANDPRCNGFSGADLSALVREAS
TAALKEFMLNRDRQSSEQAVNGVNPPLMGVNIKTTCIQAKHVEIAFQKVK
PSVSEKDRKFYEDLQKRTQRL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034289	XLOC_034289	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054392	TCONS_00054392	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR031996	NVL2_nucleolin-bd
IPR003959	ATPase_AAA_core
IPR003960	ATPase_AAA_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	GENE3D	1.10.8.60		coord: 761..871 e-value: 3.4E-19 score: 68.3 coord: 441..565 e-value: 2.2E-25 score: 88.1
None	No IPR available	GENE3D	3.40.50.300		coord: 233..440 e-value: 2.3E-58 score: 197.0 coord: 566..760 e-value: 1.7E-65 score: 220.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 502..535
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	CDD	cd00009	AAA	coord: 293..428 e-value: 9.68056E-23 score: 95.2907
None	No IPR available	CDD	cd00009	AAA	coord: 606..747 e-value: 5.22663E-29 score: 113.395
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 612..749 e-value: 4.4E-22 score: 89.4 coord: 294..431 e-value: 2.6E-18 score: 76.9
IPR031996	NVL2, nucleolin binding domain	PFAM	PF16725	Nucleolin_bd	coord: 21..80 e-value: 8.5E-12 score: 44.5
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 616..746 e-value: 8.1E-47 score: 158.9 coord: 299..427 e-value: 4.9E-42 score: 143.4
IPR003960	ATPase, AAA-type, conserved site	PROSITE	PS00674	AAA	coord: 717..735
IPR003960	ATPase, AAA-type, conserved site	PROSITE	PS00674	AAA	coord: 399..417
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 258..483
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 574..866

Blast

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BLAST of TCONS_00054392-protein vs. Swiss-Prot (Human)
Match: NVL (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1)

HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 428/887 (48.25%), Postives = 572/887 (64.49%), Query Frame = 0

Query:   24 FVDRAFLPRIKEYLEVREGPHEADDVV--DYLQNRFH-EYNRKKRTVLRLSVERALVTLLTKPKPDGDTPKLDSLEENYLRKRQKRSNSQEQENDDVDSDDSLGSMDEELVLFKDTNAMNNSMQNMYKNVSKTPKGNNEVQVTKVVNSAESQKRQPPSTSEQNTTN------KVQQQQDQNANPVAITPYE---------NVNKSHSKRNLNVISEDDRMSS-------RPSTPITKSASRKKAE------------GTKERSRKFDQSVSTTTFKDIGGYENAIAEISKLILHLKHPEVFKHLGVKPPCGFLLHGAPGCGKTLLANAIAGELKVPFFKIAAPEVVSGISGESEQKIRGLFNEARMLAPCLIFIDEIDCITPKRETAGKEMERRVVTQILTCMDEL--ASTDAHVLVIGATNRVDALDPALRRAGRFDREISLGIPDSKARRSILKVLCRDLRLEESFNFDKVASQTPGFVGADIQALVREAAILAVDSAFNMIKEKEKVAVKLFTDEQNAPSPSA-DQPIKTQAESSDSQQQTSSIAWLRDQPPLTNEQLKGLFITSEHFEKALPFVQPSAKREGFATVPDVTWNDIGALEDIRDELKMAIMAPVENPEEFEALGLTVPPGILLAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESEKAVRQVFLRARNSSPCVIFFDEIDALCPRRSQTGDSSVSSRVVNQLLTEMDGLETRKHVYIMGATNRPDILDNAILRPGRLDKLLYVGLPEPDDRYKILQTITKNGTKPLMDKTLSIQDLANDPRCNGFSGADLSALVREASTAALKEFMLNRDRQSSEQAVNGVNPPLMGVNIKTTCIQAKHVEIAFQKVKPSVSEKDRKFYEDLQKRTQR 870
            FVD     R+ +YL   +     D  V    LQ  +  +Y R+KR   R+ VE+    + +    + +   L  LE+ +L KR ++     +  +    DDS  SM E+    +  N MN+S+ ++Y+      KGN +     V N+ E ++R+  S++ + ++       K   +  +    +  TP           +  KS+ K+ +  I +D + SS       R      K + RKK +              K ++R  +  +S   F+D+GG +  + E+ K+++H++HPEV+ HLGV PP G LLHG PGCGKTLLA+AIAGEL +P  K+AAPE+VSG+SGESEQK+R LF +A   APC+IFIDEID ITPKRE A K+MERR+V Q+LTCMD+L   +  A VLVIGATNR D+LDPALRRAGRFDREI LGIPD  +R  IL+ LCR LRL ++F+F  +A  TPGFVGAD+ AL REAA+ AV+     ++E++K   ++    ++ PS    ++ + T+  S    +    +  LRDQ PL+ EQ++GL I    F  AL  VQPSAKREGF TVP+VTW DIGALEDIR+EL MAI+APV NP++F+ALGL  P G+LLAGPPGCGKTLLAKA+ANE+G+NFISVKGPELLNMYVGESE+AVRQVF RA+NS+PCVIFFDE+DALCPRRS   ++  S RVVNQLLTEMDGLE R+ V+IM ATNRPDI+D AILRPGRLDK L+VGLP P DR  IL+TITKNGTKP +D  ++++ +A D RC+ ++GADLSALVREAS  AL++ M  R +  +E+             +K   +  KH E AF+KV+ S+S+KD+  YE LQ+   R
Sbjct:    8 FVDNKLKQRVIQYLTSNKCGKYVDIGVLASDLQRVYSIDYGRRKRNAFRIQVEKVFSIISS----EKELKNLTELEDEHLAKRARQGEEDNEYTESYSDDDS--SM-EDYPDPQSANHMNSSLLSLYR------KGNPD----SVSNTPEMEQRETTSSTPRISSKTGSIPLKTPAKDSEGGWFIDKTPSVKKDSFFLDLSCEKSNPKKPITEI-QDSKDSSLLESDMKRKGKLKNKGSKRKKEDLQEVDGEIEAVLQKKAKARGLEFQISNVKFEDVGGNDMTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQKKNPEM----EDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM-ARQKSGNEKG-----------ELK---VSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 856

The following BLAST results are available for this feature:

BLAST of TCONS_00054392-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054392-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NVL	0.000e+0	48.25	Nuclear valosin-containing protein-like OS=Homo sa...	[more]

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TCONS_00054392-protein (polypeptide) - C. hemisphaerica