TCONS_00054478-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054478-protein
Unique NameTCONS_00054478-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054478-protein ID=TCONS_00054478-protein|Name=TCONS_00054478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MPKSFLIKKWGRKFNFYSRSSEFNIQKDCTEETNFLTIPSPPPARPVLKE
KNLSSPTQPSNVKEKPIDLKALFLTSIPVSKPFGLYYLEQNSRSNNGQQP
VTKRHVPPEDNPTTIIPSPNKDHIFRVSPKVDGPLNQSSFNCQLCKLSFC
DPLSLAQHKCSKIKHVEHRCPECDKVFNCPANLASHRRWHRPRSPTTNRP
RKVGKAEKKLVEKKSQISLRTPEYQIKNPKIEAMRNIREDPKLQEVPVRG
SPIVKPTVYRYKQTTQNLPNRFYDQMNIYRQRKLSNHFPTMISNNRMMVR
KHYHRIGSESSDVESEEDFLEHKQNHELSTEEIEIDVISNNSNSSSMTSP
SSSLTSPKLPYQQGLFKRGSWNGPSHTTPPPYTFSYM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034341XLOC_034341Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054478TCONS_00054478Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 168..190
e-value: 0.34
score: 20.0
coord: 140..165
e-value: 18.0
score: 11.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 170..190
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 168..195
score: 11.926
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 140..190
NoneNo IPR availableGENE3D3.30.160.60coord: 178..228
e-value: 5.0E-6
score: 25.9
NoneNo IPR availablePFAMPF12874zf-metcoord: 140..162
e-value: 0.061
score: 13.6
coord: 169..186
e-value: 0.032
score: 14.5
NoneNo IPR availableGENE3D2.20.28.30coord: 137..177
e-value: 2.3E-8
score: 33.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..359
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..62

Blast
[Close]
BLAST of TCONS_00054478-protein vs. Swiss-Prot (Human)
Match: INSM2 (Insulinoma-associated protein 2 OS=Homo sapiens GN=INSM2 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 7.556e-24
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:  134 PLNQSSFNCQLCKLSFCDPLSLAQHKCSKIKHVEHRCPECDKVFNCPANLASHRRWHRPRSPTTN 198
            PL +  F CQLCK  + DP +LAQH+CS+I  VE+RCPECDKVF+CPANLASHRRWH+PR    N
Sbjct:  259 PLGE--FICQLCKEQYADPFALAQHRCSRIVRVEYRCPECDKVFSCPANLASHRRWHKPRPAAAN 321
The following BLAST results are available for this feature:
BLAST of TCONS_00054478-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INSM27.556e-2466.15Insulinoma-associated protein 2 OS=Homo sapiens GN... [more]
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