TCONS_00054823-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054823-protein
Unique NameTCONS_00054823-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054823-protein ID=TCONS_00054823-protein|Name=TCONS_00054823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKNKMSEREQICCLVENGERCKKQSGNASFNFRVQKLVEQRKLKFSLDSN
VKHTYICDYHKNIIQKARNKRKRKDSDEENDYPEVDLSQLPVGTLRRYKR
HYRIPTRPGMSKSMLIDNIHKHFRTISVPERETITYFIYMVKTYKSKLDQ
RPADAVI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034536XLOC_034536Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054823TCONS_00054823Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025717SAP30_zn-finger
IPR025718SAP30_Sin3-bd
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025717Histone deacetylase complex subunit SAP30 zinc-fingerPFAMPF13866zf-SAP30coord: 8..77
e-value: 7.6E-32
score: 109.1
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 90..142
e-value: 2.7E-19
score: 69.1

Blast
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BLAST of TCONS_00054823-protein vs. Swiss-Prot (Human)
Match: SP30L (Histone deacetylase complex subunit SAP30L OS=Homo sapiens GN=SAP30L PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.551e-60
Identity = 87/149 (58.39%), Postives = 112/149 (75.17%), Query Frame = 0 
Query:   10 QICCLVENGERCKKQSGNASFNFRVQKLVEQRKLKFSLDSNVKHTYICDYHKNIIQKARNKRKRKDSDE-------ENDYPEVDLSQLPVGTLRRYKRHYRIPTRPGMSKSMLIDNIHKHFRTISVPERETITYFIYMVKTYKSKLDQR 151
            Q CCL+E+GERC + +GNASF+ RVQK + Q+KLK  +D +V+H YICD+HKN IQ  RNKRKRK SD+       + D PEVDL QL V TLRRYKRHY++ TRPG +K+ L + + +HFR I V E+ET+ YFIYMVK+ KS+LDQ+
Sbjct:   27 QSCCLIEDGERCVRPAGNASFSKRVQKSISQKKLKLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQK 175
The following BLAST results are available for this feature:
BLAST of TCONS_00054823-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP30L1.551e-6058.39Histone deacetylase complex subunit SAP30L OS=Homo... [more]
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