TCONS_00055001-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055001-protein
Unique NameTCONS_00055001-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1726

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055001-protein ID=TCONS_00055001-protein|Name=TCONS_00055001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1726bp
METLLKYAEKDEILPSKILFHDLHKVASKGFLNAKPQVLKAFSQVLTGLS
ETEEAINDFVCDSKGKVTNHFIKGFQDIKKQKNLEGIEDVLEILHVLVEH
APKAQEQCGALASTFLSMLPEDMWNFSIKLEISKLLNLLLENNEELKASL
LKSSECIKFLDSFGVCLREAGDYELQATIMEAIFRLISPEDKEKFASYWF
SSKNIQNSFLSIRNEEFETDGRRFLNYFNNSAADSQRVFSFPALVVSLGR
YQLKQPRDSKVTDFWVDFNVASRSISTFVNDDTNTDTESSDWEMIIIKKE
DIRDFRVNVNEEKTIVILKLFEPAYQLAPFCPEANENYVKITFPRKLNGA
VSKALGKLFGEVKYVELPISSPSISSTPGGRNLRTSMAISPLAVHGCSTS
TNKKKTLTCAISDSTVSSSSGYAEDTGTVVGEEKEEHDNEEKTNEDECER
KKDEEEKEESEHEETVQDEKASAEFPPLLQEAAEEANDEKPPAPKDGCPD
NHFVPETQEKKTNNEEEEEAKEEIHFEVEQKELPDREEKDLVFEETPIDS
DEEEVKIREEVKIEKEVKQAPRSKAKPKKTKPASSRQKKGKKLMKTNNYV
MFQDSPDENYEAAPVKTFEEQQKKKEKLQAAKTKKTIGKVKDVQSLAIYD
FDDMNDEKELDEETKEVERIEEDEKPNSKKKNDTKATRQKKKKPPVEDEA
SPVPQTTTSSRRSSRRRKEKEVNYQEPSTSDIDDFKDQSSIAGDQIVGDD
EEVDQNSDKQSFYDVVPVEEEKPVISKKKKSTNHKRKESMDRKSVSFVSP
IVDPLDQHHSPLDNLITKSVLKHQSDEQMTSSQHDEIPLTPLDGPGDADV
IAFQNAMLKEEKMNRVRQWSEKVSAKCKTSFDADLTSTPIDNTSKHDTNE
HKSNRPKPFERNIQLGWGLKGTKKSSTTQQQDSNHENNDDSIYDFHDEID
VADDEDRRRVADTPWSAQKKKKEKVKKKYTKKENKIDSDVKKFRKDDLDV
SLSDDGEAEGSVVIETKKTTRRKGIKNRKIDINDSINNENEVEVEATETK
PKGRSTRGRGKRTHNEEEEELSQVIETKQKRRPGRPKKTTNTDDNSSRNK
NSRNALMKKTKVEKSHDASLASIVASFDDNHGSHDDELEQEQNEISAIQS
QDFETRESPTSNQPQEESSPEVSINEHSPLPKISAKRFYGRLDISEHKSG
KSLNKKVDSKLEKSPVRIESKSRLQVEDEMTPVQTKPNKKPSRKPGPEFE
SPAEPISKKSKLSSKTETFVASLLKESQNTIVSSLEGSQEIQQDFMDTPM
CADETPMCEQKQTLYKNWVQQLNEKLENIEAVTNKKQSKRKLWKSPVVVM
TEDETADSPVVEKRTRSHLKKDMKRTRQQQQATASTSTTPLQQKPRHSQQ
HNDASKLIQTPDIGLCEGVDAFAKFCQSMLNKNSPPQQDMEEREREEDVD
QSATTMLSQSYVTESQPEAVPKSPPKKKNKVEVEPNKALPRPTSKLAESS
KRKAEKISPKDATNYLQLGDDTLQHSKAKRSMKYETSEDEEDEEYEADVS
DDVTTPMTSCFNHRPFDNNNMEMFNLSFGQDHDMSGVEGNEIQGLLHMFG
KNVSKSINTKKQATELFVNNVMKIVSKKVKTFCTKQSKTREIKDETYHNQ
FLNKFDDWYQMRIQKDDKIQKCIDQLKQVVKNQNDEDKLRIKKLRQSYTE
GYEERRQQXRNFGNRTRKDMKNVDNK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034655XLOC_034655Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055001TCONS_00055001Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 434..472
NoneNo IPR availableCOILSCoilCoilcoord: 1315..1339
NoneNo IPR availableCOILSCoilCoilcoord: 653..673

Blast
[Close]
BLAST of TCONS_00055001-protein vs. Swiss-Prot (Human)
Match: SYCP2 (Synaptonemal complex protein 2 OS=Homo sapiens GN=SYCP2 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 6.089e-35
Identity = 76/238 (31.93%), Postives = 138/238 (57.98%), Query Frame = 0 
Query:   84 LEGIEDVLEILHVLVEHAPKAQEQCG-ALASTFLSMLPEDMWNFSIKLEISKLLNLLLENNEELKASLLKSSECIKFLDSFGVCLREAGDYELQATIMEAIFRLISPEDKEKFASYWFSSKNIQNSFLSIRNEEFETDGRRFLNYFNNSAADSQRVFSFPALVVSLGRYQLKQPRDSKVTDFWVDFNVASRSISTFVNDDTNTDTESSDWEMIIIKKEDIRDFRVNVNEEKTIVILKL 320
            L  IED++++L V+ + + + ++Q   +      S++ +   N  I+ EI K +N +L+   +    +L + E +  + S G  + +AGDY+LQ  I+EA+ R+ + + +++ A  WFS   I  +F  I++ EFETD R FLN  N    D +RVF+FP L   L +Y+L+ P D K+ +FW+DFN+ S+++S ++  D N D +   WE + + +E ++ + + V E K ++ + L
Sbjct:  123 LNMIEDLVDLLLVIHDVSDEGKKQVVESFVPRICSLVIDSRVNICIQQEIIKKMNAMLDKMPQDARKILSNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEKQRQELAHQWFSMDFIAKAFKRIKDSEFETDCRIFLNLVNGMLGDKRRVFTFPCLSAFLDKYELQIPSDEKLEEFWIDFNLGSQTLSFYIAGD-NDDHQ---WEAVTVPEEKVQIYSIEVRESKKLLTIIL 356
The following BLAST results are available for this feature:
BLAST of TCONS_00055001-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYCP26.089e-3531.93Synaptonemal complex protein 2 OS=Homo sapiens GN=... [more]
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