TCONS_00055251-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055251-protein
Unique Name	TCONS_00055251-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	573

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055251-protein ID=TCONS_00055251-protein|Name=TCONS_00055251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp
NFYIKSTMSPRALRPKRSLINSDFEGYKLNTDGLKATSKPLLSKVYQVKR
DPNKFTFNYVKRQLMHNHLFFNQWSNDIFFVDENLNIVLIQAEKAEFQYY
TVAKLESHGEDLNSFSPTISFPTENLCITSSGCGILHLMKIHKDGQSKQF
RPLATGLIHDFNTPISILNSHHDPTTNIIHVLVLSLKDFEEDEKSVSYAL
LHWLQISNSPNDDVESTVRNWKTFKGRNLPRECWLSEDYTELFVASETEF
ELVNVVTYERLHTVSSQDEAEDTIKYYHWHQCKEMLTIVFDLTLAQDEVE
CQFLHNFLSIKLKTGKTLLEGTLEKMILQDASKWYIQEGRLEIVLVKKTP
GEFWSSVIPDEKHGVHDIEGEELERMNQIHEQLEHLTSEGIQREEKHAKD
FNIQQLEECDENLEEEIKVYSINITNGKVQLETSLGGQMLFSTSVREDSV
PHFCLRYDVDGILWQPSRSKTTFWVHIATIDAFGYVLASKQEHKFVGCSP
DFSYAVITDCKSNVYVYECSQGHSKKRAQYVASFRDSDEIFGCIVAKNKL
CVLTDNHVHILELPDPNMDTNER

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034796	XLOC_034796	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055251	TCONS_00055251	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR007052	CS_dom
IPR008978	HSP20-like_chaperone

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 403..423
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 44..284 e-value: 0.027 score: 12.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 486..570 e-value: 0.18 score: 10.4
IPR007052	CS domain	PFAM	PF04969	CS	coord: 277..347 e-value: 1.0E-6 score: 29.5
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 272..358 score: 13.099
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 285..422 e-value: 3.5E-14 score: 52.6
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 274..369

Blast

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BLAST of TCONS_00055251-protein vs. Swiss-Prot (Human)
Match: NUDC1 (NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 9.754e-57
Identity = 169/597 (28.31%), Postives = 278/597 (46.57%), Query Frame = 0

Query:   12 ALRPKRSLINSDFEGYKLNTDGLKATSKPLLSKVYQVKRDPNKFTFNYVKRQLMHNHLFFNQWSND-IFFVDE-----NLNIVLIQAEKAEFQYYTVAKLESHGEDLNSFSPTISFPTENLCITSSGCGILHLMKIHKDGQSKQFRPLATGLIHDFNTP------ISILNSHHDPTTNIIHVLVLSLKDFEEDEKSVS-YALLHWLQISNSPNDDVESTVRNWKTFKGRNLPRECWLSEDYTELFVASETEFELVNVVTYERLHTVSSQDEAEDTI----------KYYHWHQCKEMLTIVFDLT--LAQDEVECQFLHNFLSIKLKTGKTLLEGTLEKMILQDASKWYIQEGR-LEIVLVKKTPGEFWSSVIPDEKHGVHDIEGEELERMNQ---IHEQLEHLTSEGIQ-REEKHAKDFNIQQLEECDENLEEEIKVYSINITNGKVQLETSLGG-QMLFSTSVREDSVPHFCLRYDVDGILWQPSRSKTT-FWVHIATIDAFGYVLASKQEHKFVGCSPDFSYAVITDCKSNVYVYECSQGHS-------------KKRAQYVASFRDSDEIFGCIVAKNKLCVLTDNHVHILEL 563
            +LR KR L++  FEGYKL+ + L      L + V +VK   +++T  ++    M+N+L  + W  D ++++D      NL ++L  A     + + +    +  +  N    +I F +      S G G L+++   + G S   +        +   P      IS+LN+      + I  L+L ++  E D K    Y  L W+ IS    D+ +  +      +G+++P            + A E +   + +V+Y+ L  V +  + E+ +            Y+W Q ++ LT+   L     +++++ QFL + ++I LK  +  LEG L   I  ++S W I+E   LEI L+KK  G  W  ++      + D +GE +    Q   I E+L HLTSE +    +K     N Q+LEECD   EE   +   +    K     +LG  Q LFS  V    +P FCLR+DVD +LWQP  SK    W HIAT +A GYV ASK++ KF  C+P++SYA + +C   V++Y      S             +   Q VAS   +D I G      +L VLT  ++ ++++
Sbjct:    8 SLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPREVFRLPTDLTACD--NRLCASIHFSSSTWVTLSDGTGRLYVIGTGERGNSASEK-WEIMFNEELGDPFIIIHSISLLNAEE----HSIATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYEIIKRDILRGKSVPH-----------YAAIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQ-FLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPELV------IGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEKPPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPAPMSTVLYNRKEGRQVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKV 579

The following BLAST results are available for this feature:

BLAST of TCONS_00055251-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055251-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUDC1	9.754e-57	28.31	NudC domain-containing protein 1 OS=Homo sapiens G...	[more]

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TCONS_00055251-protein (polypeptide) - C. hemisphaerica