TCONS_00055266-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055266-protein
Unique NameTCONS_00055266-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length168

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055266-protein ID=TCONS_00055266-protein|Name=TCONS_00055266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MAATLRPYLNAVRSTLETAMCLENFASQVVERHVKPEVEVRSSKELLLAP
LCIARNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMLRAEN
FFVLRRKPVEGYDISFLITNFHTEQMYKNKLVDFVIQFMEEIDKEISEMK
LALNARARISAEEFLKNF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034809XLOC_034809Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055266TCONS_00055266Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008384ARPC4
IPR034666ARPC2/4
Vocabulary: Cellular Component
TermDefinition
GO:0005885Arp2/3 protein complex
GO:0015629actin cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030041actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
GO:0030833regulation of actin filament polymerization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030041 actin filament polymerization
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005885 Arp2/3 protein complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008384Actin-related protein 2/3 complex subunit 4PIRSFPIRSF039100ARPC4coord: 1..168
e-value: 1.1E-84
score: 279.7
IPR008384Actin-related protein 2/3 complex subunit 4PFAMPF05856ARPC4coord: 1..166
e-value: 8.9E-81
score: 269.3
IPR034666Arp2/3 complex subunit 2/4GENE3D3.30.1460.20coord: 1..168
e-value: 3.4E-87
score: 289.9
IPR034666Arp2/3 complex subunit 2/4SUPERFAMILY69645Arp2/3 complex subunitscoord: 3..168

Blast
[Close]
BLAST of TCONS_00055266-protein vs. Swiss-Prot (Human)
Match: ARPC4 (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 308.916 bits (790), Expect = 1.633e-109
Identity = 149/168 (88.69%), Postives = 161/168 (95.83%), Query Frame = 0 
Query:    1 MAATLRPYLNAVRSTLETAMCLENFASQVVERHVKPEVEVRSSKELLLAPLCIARNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMLRAENFFVLRRKPVEGYDISFLITNFHTEQMYKNKLVDFVIQFMEEIDKEISEMKLALNARARISAEEFLKNF 168
            M ATLRPYL+AVR+TL+ A+CLENF+SQVVERH KPEVEVRSSKELLL P+ I+RNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMM+RAENFF+LRRKPVEGYDISFLITNFHTEQMYK+KLVDFVI FMEEIDKEISEMKL++NARARI AEEFLKNF
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
The following BLAST results are available for this feature:
BLAST of TCONS_00055266-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPC41.633e-10988.69Actin-related protein 2/3 complex subunit 4 OS=Hom... [more]
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