TCONS_00055294-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055294-protein
Unique NameTCONS_00055294-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055294-protein ID=TCONS_00055294-protein|Name=TCONS_00055294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MSNKNYDVIDIQIKEEPAPYQSDDPQICSFNIKIDHSEYENYHKPLTEFQ
NNGMSLMSELQMITDLSILNCYDGDLTENIQDNFQRGFSNEIQTNKTKRD
EAKINLEEFNESNLINDELQKCNEKLPVNSYSNFESIVDQNTKLKTAPVE
NQRISQETSIQNESKSFECTECGESFTQKYNQHIKVKHQPLKTRSINSKI
NNSDINHFQGNQKKTLRQPFRWKILECNVCGLRFAENNILAKHMVQHQKA
ILKCSICTKTFSTDSEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034837XLOC_034837Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055294TCONS_00055294Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 167..188
e-value: 10.0
score: 13.2
coord: 225..247
e-value: 0.18
score: 20.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 227..247
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 225..247
score: 9.099
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 223..262
NoneNo IPR availableGENE3D3.30.160.60coord: 257..267
e-value: 0.27
score: 11.0
NoneNo IPR availableGENE3D2.20.28.30coord: 177..235
e-value: 1.1E-8
score: 34.7
NoneNo IPR availableGENE3D3.30.160.60coord: 236..256
e-value: 7.0E-8
score: 32.2
coord: 76..176
e-value: 4.2E-4
score: 20.1

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055294-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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