TCONS_00055334-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055334-protein
Unique NameTCONS_00055334-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055334-protein ID=TCONS_00055334-protein|Name=TCONS_00055334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGNYKSKSKLHRKTVNDLRDKTQMSEKELTDWHQAFIKDYPSGKLNVEQF
KNIYNKFFPNGDAGVFAEQIFQSFDNNNDGFVDFREFMTGLAVFKKGSVD
DKLRWAFSMYDLDKNGQISHSEMLEVVSAIYKMVGDTVELPEDESTPEKR
VNKIFSSVDTDHDGYLTLEEFLEVASKDKTIRSLLRCK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034861XLOC_034861Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055334TCONS_00055334Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00450RECOVERINcoord: 94..113
score: 55.38
coord: 166..186
score: 43.96
coord: 70..91
score: 51.75
coord: 24..43
score: 45.77
coord: 10..24
score: 27.95
coord: 116..134
score: 62.75
coord: 140..155
score: 72.6
NoneNo IPR availableGENE3D1.10.238.110coord: 1..95
e-value: 1.3E-28
score: 99.2
NoneNo IPR availableGENE3D1.10.238.10coord: 96..185
e-value: 2.4E-21
score: 75.1
IPR002048EF-hand domainSMARTSM00054efh_1coord: 150..178
e-value: 1.7E-4
score: 30.9
coord: 66..94
e-value: 0.0028
score: 26.9
coord: 102..130
e-value: 1.3E-5
score: 34.7
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 68..92
e-value: 2.1E-6
score: 26.8
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 101..174
e-value: 9.8E-16
score: 57.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 98..133
score: 12.589
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 62..97
score: 11.891
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 146..181
score: 12.923
IPR002048EF-hand domainCDDcd00051EFhcoord: 67..128
e-value: 1.41259E-11
score: 55.6317
IPR002048EF-hand domainCDDcd00051EFhcoord: 102..176
e-value: 4.67702E-14
score: 62.5653
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 111..123
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 75..87
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 159..171
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 7..182

Blast
[Close]
BLAST of TCONS_00055334-protein vs. Swiss-Prot (Human)
Match: HPCA (Neuron-specific calcium-binding protein hippocalcin OS=Homo sapiens GN=HPCA PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.247e-74
Identity = 102/183 (55.74%), Postives = 134/183 (73.22%), Query Frame = 0 
Query:    5 KSKSKLHRKTVNDLRDKTQMSEKELTDWHQAFIKDYPSGKLNVEQFKNIYNKFFPNGDAGVFAEQIFQSFDNNNDGFVDFREFMTGLAVFKKGSVDDKLRWAFSMYDLDKNGQISHSEMLEVVSAIYKMVGDTVELPEDESTPEKRVNKIFSSVDTDHDGYLTLEEFLEVASKDKTIRSLLRC 187
            K  SKL  + + DLR+ T+ SE EL +W++ F+KD P+G LNV++FK IY  FFP GDA  FAE +F++FD N+DG +DFREF+  L+V  +G ++ KL WAFSMYDLD NG IS  EMLE+V AIYKMV   +++PEDESTPEKR  KIF  +DT++DG L+LEEF+  A  D +I  LL+C
Sbjct:    3 KQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQC 185
The following BLAST results are available for this feature:
BLAST of TCONS_00055334-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPCA8.247e-7455.74Neuron-specific calcium-binding protein hippocalci... [more]
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