TCONS_00055354-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055354-protein
Unique NameTCONS_00055354-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length210

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055354-protein ID=TCONS_00055354-protein|Name=TCONS_00055354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MEEKSGEKVKVICLGDSAVGKSKLVERFLMDGYKPQQLSTYALTLFKYFT
QIEGRDVNVEFWDTAGQERFSSMHPSYYHSAHACILVFDVTRKPTYKNLA
NWYKELREYREDIPCILVANKIDVDYSVTKKSFNFAKKYHMPFYFVSASD
GTNVVKVFREAIRLGLDYKDNSTDFVDEVLKELEHMEETDKSLASSTPSS
ISPTSSKDDP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034871XLOC_034871Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055354TCONS_00055354Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 50..72
score: 41.98
coord: 9..30
score: 42.4
coord: 111..124
score: 42.83
coord: 143..165
score: 29.83
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 14..210
e-value: 2.5E-13
score: 60.3
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 11..168
e-value: 1.0E-10
score: 18.0
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 9..168
e-value: 4.6E-39
score: 145.8
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 6..168
e-value: 2.3E-10
score: 31.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 7..72
e-value: 6.1E-20
score: 70.5
NoneNo IPR availableGENE3D3.40.50.300coord: 73..166
e-value: 5.9E-29
score: 99.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..210
NoneNo IPR availablePROSITEPS51419RABcoord: 2..207
score: 21.319
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 10..163
e-value: 4.1E-41
score: 140.2
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 8..159
e-value: 4.2E-23
score: 79.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..189

Blast
[Close]
BLAST of TCONS_00055354-protein vs. Swiss-Prot (Human)
Match: RBL2B (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.319e-97
Identity = 131/206 (63.59%), Postives = 168/206 (81.55%), Query Frame = 0 
Query:    5 SGEKVKVICLGDSAVGKSKLVERFLMDGYKPQQLSTYALTLFKYFTQIEGRDVNVEFWDTAGQERFSSMHPSYYHSAHACILVFDVTRKPTYKNLANWYKELREYREDIPCILVANKIDVDYSVTKKSFNFAKKYHMPFYFVSASDGTNVVKVFREAIRLGLDYKDNSTDFVDEVLKELEH--MEETDKSLASSTPSSISPTSSKD 208
            + + VK+ICLGDSAVGKSKL+ERFLMDG++PQQLSTYALTL+K+   ++GR + V+FWDTAGQERF SMH SYYH AHACI+VFDV RK TY+NL+ WY ELRE+R +IPCI+VANKID D +VT+KSFNFAKK+ +P YFVSA+DGTNVVK+F +AIRL + YK NS DF+DE+ +ELE+  +E+ ++ +     SS   T S++
Sbjct:   18 ADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFRPEIPCIVVANKID-DINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEE 222
The following BLAST results are available for this feature:
BLAST of TCONS_00055354-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBL2B1.319e-9763.59Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=1... [more]
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