TCONS_00055429-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055429-protein
Unique NameTCONS_00055429-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055429-protein ID=TCONS_00055429-protein|Name=TCONS_00055429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MWCFVSEPNGTIHELILPKGSYGIDCLDMISSRINLVEKDYFGLKYTNPS
TGVNTWLNLRNKLSQQLTGRAPHRIQLTVKYFVNVQELQQQISRDIFYST
IYQQLLNEDLLDKIGQPELNKVIALIAQVKYGDFNAESVPEYSKLLPSIK
WSNELQKSVETEHLNLDMVTSSEAKIQFIKIFGDLPNYGMDIFHVNSVAE
HPDQLILGVRHDGLRIYKDKSILSETEQENLVQFIPYDEISTVSYKGKKF
TIVHGSNQDDHVHSTFLLRERQIIPF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034881XLOC_034881Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055429TCONS_00055429Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019749Band_41_domain
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR011993PH_dom-like
IPR019748FERM_central
IPR018979FERM_N
IPR018980FERM_PH-like_C
IPR000299FERM_domain
IPR029071Ubiquitin-rel_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019749Band 4.1 domainPRINTSPR00935BAND41coord: 34..46
score: 54.17
coord: 114..134
score: 20.93
coord: 173..189
score: 35.05
IPR019749Band 4.1 domainSMARTSM00295B41_5coord: 3..193
e-value: 8.7E-6
score: 35.2
IPR014352FERM/acyl-CoA-binding protein, 3-helical bundleGENE3D1.20.80.10coord: 81..187
e-value: 2.6E-9
score: 36.8
NoneNo IPR availableGENE3D3.10.20.90coord: 1..80
e-value: 8.8E-15
score: 53.9
IPR011993PH domain-likeGENE3D2.30.29.30coord: 188..273
e-value: 4.9E-9
score: 36.2
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 186..258
IPR019748FERM central domainPFAMPF00373FERM_Mcoord: 85..193
e-value: 8.1E-8
score: 32.6
IPR019748FERM central domainCDDcd14473FERM_B-lobecoord: 101..185
e-value: 5.14807E-5
score: 39.1519
IPR019748FERM central domainSUPERFAMILY47031Second domain of FERMcoord: 81..188
IPR018979FERM, N-terminalPFAMPF09379FERM_Ncoord: 8..67
e-value: 9.9E-11
score: 41.3
IPR018980FERM, C-terminal PH-like domainPFAMPF09380FERM_Ccoord: 201..265
e-value: 1.0E-5
score: 25.7
IPR000299FERM domainPROSITEPS50057FERM_3coord: 1..276
score: 38.281
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 1..83

Blast
[Close]
BLAST of TCONS_00055429-protein vs. Swiss-Prot (Human)
Match: MYLIP (E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens GN=MYLIP PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.341e-36
Identity = 76/220 (34.55%), Postives = 128/220 (58.18%), Query Frame = 0 
Query:    1 MWCFVSEPNGTIHELILPKGSYGIDCLDMISSRINLVEKDYFGLKYTNPSTGVNTWLNLRNKLSQQLTGRAPHRIQLTVKYFVNVQELQQQISRDIFYSTIYQQLLNEDLLDKIGQP-ELNKVIALIAQVKYGDFNAESVPEYSKLLPSIKWSNELQKSVETEHLNLDMVTSSEAKIQFIKIFGDLPNYGMDIFHVNSVAEHPDQLILGVRHDGLRIYKD 219
            M C+V+ P+  + E+ +   + G DCL+ +  R+ ++E DYFGL++T  S G + WLNLRN++SQQ+ G AP+R++L VK+FV    + Q+ +R IF+  I + LL   LL    Q  EL+   AL+AQ K+GD+N  +     + L + + S+    S+  +H  L+  + + A+ Q ++I   + NYG++   V        +L++GV  +G+ I KD
Sbjct:    1 MLCYVTRPDAVLMEVEVEAKANGEDCLNQVCRRLGIIEVDYFGLQFTG-SKGESLWLNLRNRISQQMDGLAPYRLKLRVKFFVEPHLILQEQTRHIFFLHIKEALLAGHLLCSPEQAVELS---ALLAQTKFGDYNQNTAKYNYEELCAKELSSATLNSIVAKHKELEGTSQASAEYQVLQIVSAMENYGIEWHSVRD--SEGQKLLIGVGPEGISICKD 214
The following BLAST results are available for this feature:
BLAST of TCONS_00055429-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYLIP5.341e-3634.55E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens ... [more]
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