TCONS_00055438-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055438-protein
Unique NameTCONS_00055438-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055438-protein ID=TCONS_00055438-protein|Name=TCONS_00055438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
NRRRETVFLHASKKMGWKTKTFIFLLPIIGYFTYKHLTDNFLSHVITISN
IYPNLPIENFAKLNPDIGNFATPDNKILPRYDFVVIGAGSAGAVVARRLS
ENKSWKILLLEAGGGANILTEIPGLLFNNFMSLNDWSYRTEAAKDGKTSS
IHTKGQVIWPRGKILGGSSSINGLVYARGNKLDYNLWSDQGNPGWSYKDV
LPYYLKSEDQRIKNLAKDTGHHSTGGRLTIEDVDRKGIFHKLMEGCKKVL
PENHDYNGGTQTGCVYYQNTKTNGQRCSTANAFLKNPPSNLHISPLSHVL
QISIHEDTHQATGVVYKKNGKVVIVNARKEVILSAGAIASPQILMLSGVG
PKEELEKHGIPLIKDLPVGQNLQDHVNVAHHMTFNESIETLPEHFQTFET
YKEYHQHRTGLLSSGIVLGAFMPASEKAKKNDWPEIQTHFYPHLITSLPV
YQQIFNFNEEYWRNVMLKELEGKNGVTFVNCLLRPKSRGHIKLRSAKADD
HPIITTNYFEHPDDLTTFVEAFKFGKKLAAALPQYNATLVDLNDPAC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034886XLOC_034886Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055438TCONS_00055438Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007867GMC_OxRtase_C
IPR000172GMC_OxRdtase_N
IPR012132GMC_OxRdtase
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.450.10coord: 114..184
e-value: 2.5E-19
score: 68.2
NoneNo IPR availableGENE3D3.30.560.10coord: 185..547
e-value: 6.6E-74
score: 248.6
NoneNo IPR availableSUPERFAMILY54373FAD-linked reductases, C-terminal domaincoord: 413..535
IPR007867Glucose-methanol-choline oxidoreductase, C-terminalPFAMPF05199GMC_oxred_Ccoord: 485..533
e-value: 4.3E-7
score: 30.4
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPFAMPF00732GMC_oxred_Ncoord: 81..376
e-value: 3.0E-70
score: 236.8
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00623GMC_OXRED_1coord: 162..185
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00624GMC_OXRED_2coord: 336..350
IPR012132Glucose-methanol-choline oxidoreductasePIRSFPIRSF000137Alcohol_oxidasecoord: 63..546
e-value: 2.9E-105
score: 351.2
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 79..423

Blast
[Close]
BLAST of TCONS_00055438-protein vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 8.768e-57
Identity = 155/488 (31.76%), Postives = 227/488 (46.52%), Query Frame = 0 
Query:   70 FATPDNKILPRYDFVVIGAGSAGAVVARRLSENKSWKILLLEAG-----GGANILT---EIPGLLFNNFMSLN-DWSYRTEAAK--DGKTSSIHTKGQVIWPRGKILGGSSSINGLVYARGNKLDYNLWSDQGNPGWSYKDVLPYYLKSEDQRIKNLAKDTGHHSTGGRLTIED----VDRKGIFHKL----MEGCKKV-LPENHDYNGGTQTGCVYYQNTKTNGQRCSTANAFLKNPPSNLHISPLSHVLQISIHEDTHQATGVVYKKNGKVVIVNARKEVILSAGAIASPQILMLSGVGPKEELEKHGIPLIKDLP-VGQNLQDHVN--VAHHMTFNESIETLPEHFQTFETYKEYHQHRTGLLSSG-IVLGAFMPASEKAKKNDWPEIQTHFYPHLITS---LPVYQQIFNFNEEYWRNVMLKELEGKNGVTFVNCLLRPKSRGHIKLRSAKADDHPIITTNYFEHPDDLTTFVEAFKFGKKLAA 530
             A+  ++    Y +VV+GAGSAG V+A RL+E+ + ++LLLEAG      G+  L+    +P  L  N      +W Y TE  +  DG+         + WPRG++ GGSSS+N +VY RG+  DY  W  QG  GW Y   LPY+ K++           GH     R    D    V R    H L    +E  ++   P   D NG  Q G  +   T   G+R S A A+L    S  ++   +  L   +  +  +A GV Y KNG+     A KEVILS GAI SPQ+LMLSG+G  ++L+K GIP++  LP VGQNLQDH+   +    T   ++ +  +  +      E+    TG  ++  +  G F+ +         P+IQ HF P  +     +P  Q+ +  +                        +R  S G +KLRSA   DHP+I  NY     D+  F    K  +++ A
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ-----------GHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPH---PDIQFHFLPSQVIDHGRVPTQQEAYQVHVG---------------------PMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFA 474
The following BLAST results are available for this feature:
BLAST of TCONS_00055438-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH8.768e-5731.76Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
back to top