TCONS_00055464-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055464-protein
Unique NameTCONS_00055464-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055464-protein ID=TCONS_00055464-protein|Name=TCONS_00055464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1404bp
MAESPAAEVLKKLPTLKVVDLRQELEKRGLEKSGLKADLVKRLEKSLLED
SINEETEDDNEAVEEDKEEEEQMVNGNGVDDEEADELEFKEGDVDEEVEE
EENEAEGEDIANEQETENGDVEMNDEEEESANVEEEQEADQDEEEEALVD
DQQEEEIESEEEAADQEEAEEETADHEETADHEEAEAEEETAEDEDEEEE
EEMDQEQDVEGCQEEQEEEDQEMEGDQDQETEAEEDDDVELDDAANEEEI
PNEENDENELTENVDEGNENIESEGSDNEEEEEEGEGENEYEDVDEEIEE
ENETETNEQSTENDIHTTEQPTEQVSEPVVAESKGLSENNIKETSGDDSS
KSAEDKETDKSSNESESVPDTKENIVEHPDQKDSKTTTLNETSNDSTKPK
DTITESKSEQATSNETNSTKDNPIDLTSENDTPAEKPKSSNEAKVNDKSA
TKEKKTVTIEEKKKDLSRCLWISGLSSITKAVDLKELFSAHGKVIGAKVV
TSAKTPGSQCFGFVTMTTPAEALVCIEKVHKTVLHEKTIEVEKAKTDPTP
AKKPVLKSSDKKSDDKSRSSRSSTSSRSSRSYRRSGETRSSHRSSRDDSK
KTGSSSSSKRDSEKHKSSSSRHKDDKKSDSKAESKSDISKDKDRKTSSSR
SSTSSSSKKESSSKASSPSKKDSKSSSRRSSPSKCTSSSHRSASKDKDKK
TDSSKKSDRDSKEKSEPKKPSKSIEELEKERAEKIEKERKLREERRAKER
EREKKLREERQKEQEKREKERRERARKEAERVRKEREKQRELEKARERER
EKERERFIRERKEKEEKERREREREREQIERERLERERLDRERKERERLE
AERMERERQERERLERERLEREARIERIEKERLRLENERLERERMERERR
PMDRGMNPGIKRPAAGDHRYPDNKRSYRDEPPQDTRKPFFGGAANPTDAR
GNLQDDVYDMAYRRTVVDSRNERPYQRENEVRRRDSRGYEPAPKEGADIR
RVVDRYPQTRERSPHRPQYEGKSDPRYNDRPSEYERERGKPWLNAPNPNA
PKTLSDVLGRAGLTGILGSQAENEPRGGAGYGREEHRGYDDARGEDKDRD
GYHREAARDSHHREPTREIRREPLPQRESHREPQRDGNPYKLDNRRPDDR
RGAHPSERRESRDGANYREGERRDPRGDERRERYEERRDARREPERKDSY
HPDGRKEPYQRRESFDRKDPYTADRKDPYAPTGHRKDSYATERKESYVDR
GKLAASNARYEPSREHRRDDRPREERREGYRHDSKPIDRGINRQNSSGPR
AGRPEPVSMTERRGLHPLAAEMASRPLPGIVQAAPHVNPPPADAFRGLTR
VPPPGVTIQQGFPPAGSQAVTIQVPPSIQLRDGRLEFTRVVPPGANIQPF
PRRF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034900XLOC_034900Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055464TCONS_00055464Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..73
NoneNo IPR availableCOILSCoilCoilcoord: 84..118
NoneNo IPR availableCOILSCoilCoilcoord: 123..215
NoneNo IPR availableCOILSCoilCoilcoord: 264..308
NoneNo IPR availableCOILSCoilCoilcoord: 724..900
NoneNo IPR availableGENE3D3.30.70.330coord: 444..617
e-value: 3.0E-18
score: 65.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 544..805
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..458
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1331..1368
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 890..1312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 838..866
NoneNo IPR availableCDDcd12417RRM_SAFB_likecoord: 470..542
e-value: 1.65503E-30
score: 116.291
IPR003034SAP domainSMARTSM00513sap_9coord: 13..47
e-value: 9.1E-9
score: 45.1
IPR003034SAP domainPFAMPF02037SAPcoord: 15..46
e-value: 5.7E-10
score: 38.6
IPR003034SAP domainPROSITEPS50800SAPcoord: 13..47
score: 11.205
IPR003034SAP domainSUPERFAMILY68906SAP domaincoord: 13..47
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 469..542
e-value: 4.5E-15
score: 66.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 470..539
e-value: 5.9E-10
score: 38.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 468..546
score: 11.98
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 465..549

Blast
[Close]
BLAST of TCONS_00055464-protein vs. Swiss-Prot (Human)
Match: SAFB1 (Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4)

HSP 1 Score: 132.109 bits (331), Expect = 5.671e-31
Identity = 70/155 (45.16%), Postives = 95/155 (61.29%), Query Frame = 0 
Query:  424 IDLTSENDTPAEKPKSSNEAKVNDKSATKE----KKTVTIEEK-KKDLSRCLWISGLSSITKAVDLKELFSAHGKVIGAKVVTSAKTPGSQCFGFVTMTTPAEALVCIEKVHKTVLHEKTIEVEKAKTDPTPAKKPVLKSSDKKSDDKSRSSRSS 573
             D  + N+ P    +SS     + K ++ E     K ++ EEK +    R  W+SGLSS T+A DLK LFS +GKV+GAKVVT+A++PG++C+GFVTM+T  EA  CI  +HKT LH K I VEKAK +P   K    + SD K +  S S RS+
Sbjct:  357 FDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRST 511
The following BLAST results are available for this feature:
BLAST of TCONS_00055464-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAFB15.671e-3145.16Scaffold attachment factor B1 OS=Homo sapiens GN=S... [more]
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