TCONS_00055776-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055776-protein
Unique NameTCONS_00055776-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055776-protein ID=TCONS_00055776-protein|Name=TCONS_00055776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MPISCRFYRQKYPEIDDIVMVNVRSIAEMGAYVHLLEYKNIEGMILLSEL
SRRRIRSINKLIRVGRNECVVVIRVDKDKGYIDLSKRRVSIEEVKKCEEK
FTRGKTVASILRHVGEILKYESDEELEDLFEKTAWFFDEKYKTTGGAYEA
FKHAVTEPTILDECDLDEKTKEVLMTNINRRMMTQAVKVRSDIEVSCYSY
EGIDAIKEALRQGVKLSTEELPIKVNLIAPPLYVITMTTLDRDGALEAIG
RANNAIKESIENNKGTFVVKMEPKVVTDSDEADLQKTLEQLEQMNQEKDG
DDDGESESESEDDEEEPAAEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035117XLOC_035117Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055776TCONS_00055776Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR024055TIF2_asu_C
IPR011488TIF_2_asu
IPR003029S1_domain
IPR024054TIF2_asu_middle
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 277..301
NoneNo IPR availableGENE3D2.40.50.140coord: 2..89
e-value: 1.1E-16
score: 60.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..321
NoneNo IPR availableCDDcd04452S1_IF2_alphacoord: 13..88
e-value: 7.05884E-41
score: 138.101
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 14..87
e-value: 6.2E-12
score: 55.6
IPR024055Translation initiation factor 2, alpha subunit, C-terminalGENE3D3.30.70.1130coord: 186..309
e-value: 4.5E-42
score: 142.4
IPR024055Translation initiation factor 2, alpha subunit, C-terminalSUPERFAMILY110993eIF-2-alpha, C-terminal domaincoord: 185..301
IPR011488Translation initiation factor 2, alpha subunitPFAMPF07541EIF_2_alphacoord: 130..241
e-value: 3.9E-36
score: 123.6
IPR003029S1 domainPFAMPF00575S1coord: 13..87
e-value: 2.2E-15
score: 56.6
IPR003029S1 domainPROSITEPS50126S1coord: 16..87
score: 16.849
IPR024054Translation initiation factor 2, alpha subunit, middle domainGENE3D1.10.150.190coord: 93..182
e-value: 4.9E-27
score: 93.6
IPR024054Translation initiation factor 2, alpha subunit, middle domainSUPERFAMILY116742eIF2alpha middle domain-likecoord: 89..181
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 11..92

Blast
[Close]
BLAST of TCONS_00055776-protein vs. Swiss-Prot (Human)
Match: IF2A (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 442.965 bits (1138), Expect = 1.439e-157
Identity = 215/315 (68.25%), Postives = 261/315 (82.86%), Query Frame = 0 
Query:    1 MP-ISCRFYRQKYPEIDDIVMVNVRSIAEMGAYVHLLEYKNIEGMILLSELSRRRIRSINKLIRVGRNECVVVIRVDKDKGYIDLSKRRVSIEEVKKCEEKFTRGKTVASILRHVGEILKYESDEELEDLFEKTAWFFDEKYKTTG-GAYEAFKHAVTEPTILDECDLDEKTKEVLMTNINRRMMTQAVKVRSDIEVSCYSYEGIDAIKEALRQGVKLSTEELPIKVNLIAPPLYVITMTTLDRDGALEAIGRANNAIKESIENNKGTFVVKMEPKVVTDSDEADLQKTLEQLEQMNQEKDGDDDGES-ESESED 312
            MP +SCRFY+ K+PE++D+VMVNVRSIAEMGAYV LLEY NIEGMILLSELSRRRIRSINKLIR+GRNECVVVIRVDK+KGYIDLSKRRVS EE  KCE+KFT+ KTV SILRHV E+L+Y  DE+LE LF++TAW FD+KYK  G GAY+AFKHAV++P+ILD  DL+E  +EVL+ NINRR+  QAVK+R+DIEV+CY YEGIDA+KEALR G+  STE +PIK+NLIAPP YV+T TTL+R   L  + +A   IKE IE  +G F V+MEPKVVTD+DE +L + +E+LE+ N E DGDDD E  E+++ED
Sbjct:    1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEVDGDDDAEEMEAKAED 315
The following BLAST results are available for this feature:
BLAST of TCONS_00055776-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF2A1.439e-15768.25Eukaryotic translation initiation factor 2 subunit... [more]
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