TCONS_00055790-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055790-protein
Unique NameTCONS_00055790-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2314

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055790-protein ID=TCONS_00055790-protein|Name=TCONS_00055790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2314bp
MSEWAVTXFFTNRKNEVRKNSAGNKIFHDIEMTLQYDYFSYVDRLFFDST
QEFINHGRAYYFEVMNEQNSVVSTQSLSATITDNQPDPFQTQMTLAILQT
DLQTRFHQGYTMVMSVFGSSNITTKHVRMGGNQFTFLAPPYRLVTLSLYP
VTHGGHGPAQEITFLTNKQVNLVPPTVISLLSVDLTQDQLEVKWEHYNIE
HWGGDEVGYTVAYKKVIDYEDFSFNLNDGYTIFEAQANMNVDDTIFEMAN
SAELSYTFTGLETFTLYSVLVCAKNEIGNGSCFEVRNRTAEGVPEAGPHI
NTTEALFLEESDVARITWIPVDLTNQEDLDFLNSYSYNEYQLQLRSHLSS
ATNTQISETVPAGSNHFNFTLTNDDFLTFHLDISITNNFGTGPPRNICFA
LGENVPSGAPTLLENFDKTAWVLNLTVGNVALPAENGIITHYNVTYKARE
FDDDLHIMNSTFREHLPQDVEVWDLMKEGVVNCTYFEENEIPLSSKPLNF
SITDLFPFTTYDVNVYPCTIVGCSDSSMSGEFVTDETTPSCVPNVTMANS
SSTSLLVNWHHLTHQCIHGVLQDYLLLIYESEIVPPVYNNNKTTDQVTLD
VTDLEKYWNYSLVLYARNNAGYGPASDPIWAMTEEDIPEGPPTNVSYQPV
NSTALNITMMIPERHLVNGIILQYKVRYWTTEDAEKTVIVDRAEDDTVTS
VVISGLREFFNHSVRISAFTKFGWGPESEETLMLTDEDVPSAPPVDFEVL
STSHIYLTLTWGKIPLLSTHGIMCNFSLQCNGTLANGSLHKREETVLYEE
AMEYYQFNMTDLFPHTIYNCSIKGCTTPGCGPITIASNKTLEFYPSGTVQ
SIIQVNHNETESLYIEYTDVLPLEKKGNITHFNISVNKVENTWEEEDNTT
QYYRVDGGTFQFSIIGGLDNYTEYFITITPYTLIGPGPTHANVTFRTAAN
LPTRSPEIFFLQNISSSALNVQWKAPNSSYCEGPLQGFVIFFRLTDEHIV
CNLFDNCTTPNSTFVNQTTFSKDLMDLELHSNYTLWMAAQTERGLGVPTD
IFMVMTDAFVNGNWTIWTSWGECDASCGLGYSRRLRWCTNPEPSAGGSDC
EGDPAEALPCNDFACPAMYLAEHGIDCEDTCTHINESYGCFNKLNTHEAN
QVFITARDPSNYTLVVNITCDEAPSSAVTAYSRTLHPSYDVITGECSGYK
DAPLKINCTAEEIIDSNTRRLCYCVDIESMGYEEWAPWSPCTQPCDVGTQ
TRFRNCLMERGCNKVVDRKDCNTFQCPIHGAWGQWTEYGSCDRTCGFGNR
KRTRKCDDPLPQHDGDYCPGTDEEIISGCNPYPCPIHGVWSDWHMEDFCK
KPCGGDAYRLRYRYCDNPPPKYNGQECPGDSEIRLPCNTERACKERIEVD
FVAKLVDYDWDFTMVYKDQQAFLGVESDVKYACMQVLNETVGAQNILDIQ
VNQLSRGSVITNFTITYQYVPYIEVLVMQDAIDKVGKIHTLNISHINVTS
KDVPTLPPVFTAHSPTPFTLEVNWDPVDNSSLNGVRYLYYVYYRQLDHPD
RLWEVTGTSNLTLTIKDLKPLTLYGLRMTVSIEEGNGVASLEQEVWTIEG
VPYIKPPNGDHSILSYETVYFNWDAISVNQVPGVLRGYQITYRSYFDNST
LVSRTSPDLLQRTITGMTPNTWYWVEIAGFTNKGLGPEHLLIFQTPPGPP
VVPPPNITIYERYSTEEIKITWDQIPNEFRMGLMRGYKVRYQLIRTSGLD
LPVQPIITIAHDRFVLFHVFKGLRPYSEYKIELFGYADEGDGPAATLYAS
TCACPERVYANFLKQPPFVVTNPRNSSDVTGFFPELMTKILMEVCVHCDA
YRPTIYYDRTGLGYPSKKINMAKVKEGVDEGTHLNFPFFGRFEIEKYEGF
YPYIGIIYSQGVAMIVKDVKVKNLGFVNILLAISKAWSVLFVGVLMSAIC
GWVFWFTEQGSEETEISLDRPILGALQGLWMAYVTMTTVGYGDFVPTTIR
SKAVMIFWVLIGLVTMGVITGVISSGLTVGDQEGAIKLYGTLTATLPDSF
ERRLAILRNAVVDERNRTTVEDLFDAVANGEVVVALLDATVAAGYEDVLK
AKELRAMKIIDTNSGYGITLSGGLEPLEADIRSYVAANRPVILEYQRKNI
PRLVPTLADPEFTLISEEEVVAMMTYMGIAFAVICFFAFIMSLIRKKRER
MVKPEEPFTSSKYYDVMETFVNKFNQEYEEKIEKMVERQFNDFNDLQVLR
QNYGRLLARAGYRKDVIEDSFNKKKKKDVRSIVRKKRNERLEEIINRTSG
ADGYFGVCNEAYER
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035120XLOC_035120Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055790TCONS_00055790Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR000884TSP1_rpt
IPR013783Ig-like_fold
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1603..1686
e-value: 26.0
score: 7.9
coord: 539..623
e-value: 8.1E-4
score: 28.7
coord: 740..831
e-value: 10.0
score: 11.5
coord: 1701..1792
e-value: 0.0037
score: 26.5
coord: 407..524
e-value: 33.0
score: 7.0
coord: 639..725
e-value: 1.3E-4
score: 31.4
coord: 1504..1587
e-value: 1.6E-4
score: 31.0
coord: 953..1046
e-value: 0.52
score: 19.3
coord: 846..937
e-value: 7.3
score: 12.7
coord: 174..280
e-value: 8.3E-5
score: 32.0
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 641..728
e-value: 9.2E-8
score: 32.2
coord: 956..1048
e-value: 1.2E-5
score: 25.5
coord: 542..626
e-value: 5.1E-6
score: 26.6
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 440..537
score: 7.464
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 743..846
score: 10.462
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 955..1059
score: 12.032
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1504..1600
score: 14.888
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 849..950
score: 9.823
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1703..1806
score: 10.667
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 541..636
score: 14.02
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1605..1698
score: 11.014
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 174..296
score: 10.706
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 641..738
score: 19.4
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1612..1687
e-value: 0.00961333
score: 35.5499
IPR003961Fibronectin type IIICDDcd00063FN3coord: 872..947
e-value: 0.00459656
score: 36.7055
IPR003961Fibronectin type IIICDDcd00063FN3coord: 470..534
e-value: 0.00562401
score: 36.3203
IPR003961Fibronectin type IIICDDcd00063FN3coord: 174..280
e-value: 1.85746E-4
score: 40.9427
IPR003961Fibronectin type IIICDDcd00063FN3coord: 956..1056
e-value: 8.45513E-6
score: 45.1799
IPR003961Fibronectin type IIICDDcd00063FN3coord: 539..633
e-value: 2.21572E-6
score: 47.1059
IPR003961Fibronectin type IIICDDcd00063FN3coord: 640..735
e-value: 5.87779E-10
score: 57.8915
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1612..1797
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 538..740
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 872..1056
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1496..1603
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 397..450
coord: 251..294
coord: 173..221
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 738..907
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 434..451
coord: 483..539
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 1064..1116
e-value: 2.5E-11
score: 53.6
coord: 1337..1394
e-value: 6.6E-4
score: 29.0
coord: 1232..1277
e-value: 6.0E-8
score: 42.4
coord: 1282..1335
e-value: 2.4E-9
score: 47.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1336..1393
e-value: 1.1E-8
score: 34.8
coord: 1278..1334
e-value: 4.6E-13
score: 48.8
coord: 1060..1115
e-value: 1.5E-14
score: 53.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 1284..1334
e-value: 8.6E-8
score: 32.2
coord: 1340..1393
e-value: 6.9E-4
score: 19.7
coord: 1234..1270
e-value: 5.4E-4
score: 20.0
coord: 1066..1115
e-value: 7.0E-7
score: 29.3
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1228..1277
e-value: 3.8E-7
score: 29.9
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1337..1394
score: 9.181
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1061..1116
score: 12.868
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1279..1335
score: 12.027
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1229..1277
score: 10.23
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1059..1115
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1232..1272
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1276..1334
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1333..1390
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 638..736
e-value: 2.0E-17
score: 62.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1697..1807
e-value: 7.6E-7
score: 28.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1606..1696
e-value: 1.7E-7
score: 30.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1494..1605
e-value: 6.4E-10
score: 38.7
coord: 538..637
e-value: 4.2E-13
score: 49.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 737..842
e-value: 2.4E-6
score: 27.0
coord: 843..949
e-value: 9.1E-7
score: 28.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 304..402
e-value: 0.015
score: 15.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 950..1059
e-value: 3.7E-9
score: 36.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 171..303
e-value: 1.9E-10
score: 40.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 427..537
e-value: 3.6E-10
score: 39.6
NoneNo IPR availableGENE3D1.10.287.70coord: 1928..2241
e-value: 1.2E-19
score: 69.8
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1936..2032
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 1974..2026
e-value: 7.5E-11
score: 41.8

Blast
[Close]
BLAST of TCONS_00055790-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.630e-39
Identity = 112/393 (28.50%), Postives = 158/393 (40.20%), Query Frame = 0 
Query: 1060 VNGNWTIWTSWGECDASCGLGYSRRLRWCTNPEPSAGGSDCEGDPAEALPCNDFACPA-MYLAEHGI--DCEDTCTHINESYG--CFNKLNTH-----EANQVFITARDPSNYTLVVNI----------------TCDEAPSSAVTAYSRTLHPSYDVITGE-CSGYKDAPLKINCTAEEIIDSNTRRLCYCVDIESMGYEEWAPWSPCTQPCDVGTQTRFRNC------LMERGCNKVVDRKD-CNTFQCPIHGAWGQWTEYGSCDRTCGFGNRKRTRKCDDPLPQHDGDYCPGTDEEIISGCNPYPCPIHGVWSDWHMEDFCKKPCGGDAYRLRYRYCDNPPPKYNGQECPGDSEIRLPCNTERAC---KERIEVDFVAKLVDYDWDFTMV 1415
            V+G ++ W++W  C  +CG G  +R R C  P P+ GG  C+G   E   C +  CP     +E  +  +C  +C   N++    C N    H     E N V I         ++ NI                TC E+        +R  +       G  C G           AE  +     R C         +  WA WS C+  C  G + R R C         R C     + D CN+  CP HG W  W+ +G+C RTC  G  +R R CD+P P + G  C G D +I   CN   CP+ G W  WH    C   CGG   + R R CD+P P   G+ CPGD+     CN + AC    +R     +  + D ++    +
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEI---------IMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDG-----------AETQMQVCNERNCPI----HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQI-QRCNTDMCPVDGSWGSWHSWSQCSASCGG-GEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQ-ACPGGPQRARGSVIGNINDVEFGIAFL 4893

HSP 2 Score: 137.887 bits (346), Expect = 4.802e-32
Identity = 68/193 (35.23%), Postives = 97/193 (50.26%), Query Frame = 0 
Query: 1208 CTAEEIIDSNTRRLCYCVDIESMGYEEWAPWSPCTQPCDVGTQTRFRNCLMERGCN-------KVVDRKDCNTFQCPIHGAWGQWTEYGSCDRTCGFGNRKRTRKCDDPLPQHDGDYCPGTDEEIISGCNPYPCPIHGVWSDWHMEDFCKKPCGGDAYRLRYRYCDNPPPKYNGQECPGDSEIRLPCNTERAC 1393
            C A  ++ S   R+   V +   G+ +W+ W  C+  C  G Q R R C      N         ++ ++C    CP+ G+W +W+ +  C R+CG GN+ RTR C++P  QH G  C G   EII  CN  PCP+HG WS W     C + C G   + R R C+NPPP + G  C G +E ++    ER C
Sbjct: 4509 CVARNLMGSVLVRVPVIVQVHG-GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-CNIRPCPVHGAWSAWQPWGTCSESC-GKGTQTRARLCNNPPPAFGGSYCDG-AETQMQVCNERNC 4697
The following BLAST results are available for this feature:
BLAST of TCONS_00055790-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.630e-3928.50Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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