TCONS_00055929-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055929-protein
Unique Name	TCONS_00055929-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	283

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055929-protein ID=TCONS_00055929-protein|Name=TCONS_00055929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MSEYGQVKLGKLKLKGEGKSKKKSKKNKRKHDEEGGESSSSTKAWNEETK
KYHGWWPLKTFEDLGCGIVAVQTSFKNSYIFAVDNGTLRLGSEHDDHLEA
IPMEEEIFTLIKISENKIAFKSGYGKYVSVNARGDVMARSEAVGPQEQIE
VVIENEKIALQGHNGYFITINDEGDFKALSRTAKDKEIFVLRSNVSRNKK
KKTLNEEEEAGDVRHFEINYVKQFQSFKNNKLKLHEGPSSSLEKARNKGK
LHEAMLDRREKMKADRYKKLEEDLRKDNRRKHK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035216	XLOC_035216	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055929	TCONS_00055929	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010414	FRG1
IPR013865	DUF1754_euk
IPR008999	Actin_cross-linking

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.80.10.50		coord: 42..199 e-value: 1.1E-20 score: 73.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..283
IPR010414	Protein FRG1	PFAM	PF06229	FRG1	coord: 77..267 e-value: 5.7E-56 score: 189.2
IPR013865	Protein of unknown function DUF1754, eukaryotic	PFAM	PF08555	DUF1754	coord: 3..50 e-value: 1.2E-5 score: 25.9
IPR008999	Actin cross-linking	SUPERFAMILY	50405	Actin-crosslinking proteins	coord: 76..192

Blast

[Close]

BLAST of TCONS_00055929-protein vs. Swiss-Prot (Human)
Match: FRG1 (Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.433e-60
Identity = 101/215 (46.98%), Postives = 144/215 (66.98%), Query Frame = 0

Query:   55 WWPLKTFEDLGCGIVAVQTSFKNSYIFAVDNGTLRLGSEHDDHLEAIPMEEEIFTLIKISENKIAFKSGYGKYVSVNARGDVMARSEAVGPQEQIEVVIENEKIALQGHNGYFITINDEGDFKALSRTAKDKEIFVLRSNVSRNKKKKTLNEEEEAGDVRHFEINYVKQFQSFKNNKLKLHEGPSSSLEKARNKGKLHEAMLDRREKMKADRYKK 269
            WW +  F ++  G +A++   K +YI A+DNG   LG+ H +  E  P   E FT +K+S+++IA KSGYGKY+ +N+ G V+ RS+A+GP+EQ E V +N K+AL   N  FI  N+ GD +A S+TA ++E+  +RS   R  KKK    EE+ G+V+  EINYVK+FQSF+++KLK+ +  S  L+KAR  G LHE +LDRR K+KADRY K
Sbjct:   47 WWTVTNFGEIS-GTIAIEMD-KGTYIHALDNGLFTLGAPHKEVDEG-PSPPEQFTAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRAKLKADRYCK 258

The following BLAST results are available for this feature:

BLAST of TCONS_00055929-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055929-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FRG1	2.433e-60	46.98	Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1	[more]

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TCONS_00055929-protein (polypeptide) - C. hemisphaerica