TCONS_00055982-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055982-protein
Unique NameTCONS_00055982-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055982-protein ID=TCONS_00055982-protein|Name=TCONS_00055982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp
FQEKKTQNKNRKKTHRMENEDEDFALALKLFTELNEGEGEQSQSVKGGKP
DEKLSIVDPSWELIDPVPNIHELFVQFNAAYFDGMLASVSVQWSPRMTLC
AGLCYYERRGKCCSIKLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNK
DHDGHGPEFHKHMYRINKETGTNISVYHSFHDEVDHHRQHWWRCDGPCVK
RPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKIKEPEKPVKQSKKS
KKLEETGQKLGSSSSESNKNNKNAITNWFQKTDSSKLSTSSNSSNSISID
CEEDLKPPINPWADDSYTSNSKNSKPTSKTNSNPKTKNNTSNHGNQNKGK
YPAGSTAVKGGGSRTSTITSKGKNPPTNENDIYRSSSTGASSNIYGFKMS
ANNKEDSAKQPLASFSGNGKRISSTNDEPSGNSGRENFLKRLENNMKGNT
QRKPSTNSSQISIPPSSNTFRKPKDSDFSMKNQNKDRTQKKETTEKTPPN
QPSFSRNPTTNQNKSPYTNKQPHNAQSNLTNTKRNLSSSSSQNSSSTSPK
KTKFSKETHMVISSDEEDNVQQQQNLVDCPACPMRVPEHLLNEHLDECLT
S
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055982TCONS_00055982Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006640SprT-like_domain
IPR006642Znf_Rad18_put
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006640SprT-likeSMARTSM00731sprt_6coord: 68..237
e-value: 7.5E-57
score: 204.9
IPR006640SprT-likePFAMPF10263SprT-likecoord: 71..182
e-value: 1.9E-32
score: 111.5
IPR006642Zinc finger, Rad18-type putativeSMARTSM00734c2hc_5coord: 576..599
e-value: 6.1E-5
score: 32.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..559

Blast
[Close]
BLAST of TCONS_00055982-protein vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 1.027e-101
Identity = 138/221 (62.44%), Postives = 168/221 (76.02%), Query Frame = 0 
Query:   21 DEDFALALKLFTELNEGEGEQSQSVKGGKPDEKLSIVDPSWELIDPVPNIHELFVQFNAAYFDGMLASVSVQWSPRMTLCAGLCYYERRGKCCSIKLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNKDHDGHGPEFHKHMYRINKETGTNISVYHSFHDEVDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKIKEPE 241
            D+D  LAL+L  E N  E E+  +       E LS+VD SWEL+DP P++  LFVQFN  +F G L +V V+WS RMTLCAG+C YE +G  CSI+LS PLLKLRPRKDLVETLLHEMIHA LFVT+N+KD +GHGPEF KHM+RIN  TG NI+VYH+FHDEVD +R+HWWRC+GPC  RPP++G V+RA NR PS  D WW +H++ CGG + KIKEPE
Sbjct:    2 DDDLMLALRLQEEWNLQEAERDHA------QESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPE 216
The following BLAST results are available for this feature:
BLAST of TCONS_00055982-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRTN1.027e-10162.44SprT-like domain-containing protein Spartan OS=Hom... [more]
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