TCONS_00056007-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056007-protein
Unique NameTCONS_00056007-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1436

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056007-protein ID=TCONS_00056007-protein|Name=TCONS_00056007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1436bp
MGSRIPSSERINLSPLCMSAVPSGIQTPVEPGTGQKPLPPSELASVTPPV
TNSNGIPSATPLQQLPGHDVKASNRGKSILEKFKGNEQYKPAMAVQPSQD
SVKDFTGSRWIHSEMGSRIPSSEMISLSPLTMSGIPSGIQTPAEPNTGCI
PLSEAGTNNTLPNVNQTEISSSTGVLGDEEFRPNSSPGDHVINKDGVKLR
QKRQNPPLGNNNNNNTTSASGEDEHQMSEYMNRMKISDVPRFDYVEEDSV
KNYGELSSTRQSYENLNYNGAWSNNTSGLVTPCDHGSICGGIRPYRPQPP
QAALQEENDGINPNSDLNESEKPKDEQQVPLVGDVKPSTNHQPNTKRIQL
NLDTTVSTFPIKDHSQPSNNKDTSSTNNNNNNARRRNSTSSLESAHSNRT
DISTVVNAPMSMHNTAPASPDPDGSEISDSTVSENDESAEGTAGYAPKPS
DLTQPPRWHHTPDTDQQPSRMAQQNEMVARQQSVQPPQNDFSRKNLIQMA
KEQFPKQQTQPPLHGGNHPTANDQIHHHMLPPSHPSQQRFNYSHHHQQQH
GPSPHYGGGSHHPMHQDYPPHHYDHNPHHPSYPNYDRGGLRYGYSPNTRH
PQQPHPQAHSQQHRFKQPLTRYPSSGGSHDNPDFPMHGINHMKSRMNNGG
ISGPPHPSTLGAGGPRPGSMDMRHNMGMRPQYMQPQQHGQPRPYMQQHPG
NMPPSRPPTTINGQMNSQTQHDFYGDPPPPPTSTGVLPPPAQQQPLPPQQ
LPPTSAHHQHQLPNQPQQQQPPTTSAEPKPSNDQASAANKNGNRTYSVTS
LEPNRASPPQNDTLDTASVVSFASMPTSHQNMDTRVDMMSSLLSMLGTHD
HDDLARTLLAMSSNPDSCVAMRQSQCVPLLIKLLHTENKETGEVNWGARQ
RAGRALHNIVHSGSGDRRSKREVRVLHFLEIIRKHTEDIMQEETDSFQSD
IPIQQIRPDHGPGSAVAAIMKLSFDEEHKLSICELGGLQSVCELLAVDYR
VNKDTTEPSIISLRKYIGMILTNLTYKDAKNKAVLGNMHKTLLAVIGQLR
LTSEEDLVQVFAVITQNISWRPDERMQQTLKSINAVRVLMMCIQQLRTET
CIRSVLSAVWNLSAHNSENKEEICRTPGSLKYLTYALSYRSPTNTLKVIE
NAGGILRNISSHIAINPEYRRILRQEGCLQTLVSHLRFPSTRVVSNACGV
LWNISARFVEDQEILWDLGAVSILKTLINSKHTSIAASSTAALRNLLAVK
PGSSGTDTESQLSYKHRTNSLPMRGQFRRGDKKYRSAGAGARKDQIRGKN
THSHDEDITTDRSRQLHELYDDYPPSYRDRTLNDSTPPIFEEGVIDPPPY
GNGLYEQHSISSEKSPSQYFFPAPEAGRLPMSAPMNRRQLVRDRDSSSSC
SSFSPNDGFKASSARKQPEMFQTVDLRNEEKPPXGP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035247XLOC_035247Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056007TCONS_00056007Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 975..1026
e-value: 2.5
score: 17.1
coord: 1072..1114
e-value: 120.0
score: 4.7
coord: 1208..1248
e-value: 64.0
score: 7.0
coord: 1166..1206
e-value: 1.9E-7
score: 40.7
coord: 864..911
e-value: 5.9E-4
score: 29.2
coord: 1116..1161
e-value: 46.0
score: 8.1
IPR000225ArmadilloPFAMPF00514Armcoord: 1166..1206
e-value: 7.8E-8
score: 32.0
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1163..1256
e-value: 5.1E-13
score: 48.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1005..1162
e-value: 2.0E-9
score: 36.3
coord: 816..1000
e-value: 4.6E-10
score: 38.4
NoneNo IPR availableCDDcd00020ARMcoord: 1122..1246
e-value: 2.34579E-18
score: 82.3623
NoneNo IPR availableCDDcd00020ARMcoord: 842..939
e-value: 5.90515E-6
score: 45.3832
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 1052..1248
coord: 965..996
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 830..1081

Blast
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BLAST of TCONS_00056007-protein vs. Swiss-Prot (Human)
Match: APC (Adenomatous polyposis coli protein OS=Homo sapiens GN=APC PE=1 SV=2)

HSP 1 Score: 446.047 bits (1146), Expect = 1.046e-129
Identity = 227/442 (51.36%), Postives = 305/442 (69.00%), Query Frame = 0 
Query:  827 TSHQNMDTRVDMMSSLLSMLGTHDHDDLARTLLAMSSNPDSCVAMRQSQCVPLLIKLLHTENKETGEVNWG-------ARQRAGRALHNIVHSGSGDRRSKREVRVLHFLEIIRKHTEDIMQEE------TDSFQSDIPI---QQIRPDHGPGSAVAAIMKLSFDEEHKLSICELGGLQSVCELLAVDYRVNKDTTEPSIISLRKYIGMILTNLTYKDAKNKAVLGNMHKTLLAVIGQLRLTSEEDLVQVFAVITQNISWRPDERMQQTLKSINAVRVLMMCIQQLRTETCIRSVLSAVWNLSAHNSENKEEICRTPGSLKYLTYALSYRSPTNTLKVIENAGGILRNISSHIAINPEYRRILRQEGCLQTLVSHLRFPSTRVVSNACGVLWNISARFVEDQEILWDLGAVSILKTLINSKHTSIAASSTAALRNLLAVKPG 1252
            TSH  + T+V+M+ SLLSMLGTHD DD++RTLLAMSS+ DSC++MRQS C+PLLI+LLH  +K++  V  G       AR RA  ALHNI+HS   D+R +RE+RVLH LE IR + E   + +       D  ++ +P     QI P      AV  +MKLSFDEEH+ ++ ELGGLQ++ ELL VD  +   T +   I+LR+Y GM LTNLT+ D  NKA L +M   + A++ QL+  SE DL QV A + +N+SWR D   ++TL+ + +V+ LM C  +++ E+ ++SVLSA+WNLSAH +ENK +IC   G+L +L   L+YRS TNTL +IE+ GGILRN+SS IA N ++R+ILR+  CLQTL+ HL+  S  +VSNACG LWN+SAR  +DQE LWD+GAVS+LK LI+SKH  IA  S AALRNL+A +P 
Sbjct:  305 TSH--LGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDS--VLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICP------AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 735
The following BLAST results are available for this feature:
BLAST of TCONS_00056007-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APC1.046e-12951.36Adenomatous polyposis coli protein OS=Homo sapiens... [more]
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