TCONS_00056072-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056072-protein
Unique NameTCONS_00056072-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length185

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056072-protein ID=TCONS_00056072-protein|Name=TCONS_00056072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MQQRYPQLSIHAANYPPPPLYKNLATVVSLSKWAALGTIVLGERLQIWQT
MNMQPPSMYTWAQEHKVLACFATFFLGNSVEGGLVQTGAFEVELNGMPIW
SKLKSGRIPQGNELFDIINSQMDLSGKSQFTPPKGNPQFVDTPPKHGGEE
SQDVFDNDNELPPMNENQQADSNDFAEFDSEREDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035288XLOC_035288Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056072TCONS_00056072Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011893Selenoprotein_Rdx-typ
IPR012336Thioredoxin-like_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011893Selenoprotein, Rdx typeTIGRFAMTIGR02174TIGR02174coord: 2..119
e-value: 3.8E-14
score: 50.7
IPR011893Selenoprotein, Rdx typePFAMPF10262Rdxcoord: 78..119
e-value: 5.7E-8
score: 32.8
NoneNo IPR availableGENE3D3.40.30.10coord: 41..124
e-value: 5.6E-11
score: 41.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..185
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 86..124

Blast
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BLAST of TCONS_00056072-protein vs. Swiss-Prot (Human)
Match: SELT (Selenoprotein T OS=Homo sapiens GN=SELENOT PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.189e-32
Identity = 51/124 (41.13%), Postives = 80/124 (64.52%), Query Frame = 0 
Query:    1 MQQRYPQLSIHAANYPPPPLYKNLATVVSLSKWAALGTIVLGERLQIWQTMNMQPPSMYTWAQEHKVLACFATFFLGNSVEGGLVQTGAFEVELNGMPIWSKLKSGRIPQGNELFDIINSQMDL 124
            + QRYP + I   NY P P+Y+++A+ +S+ K   +G I++G+    +    MQ PS++ W QE+KV AC   FFL N +E   + TGAFE+ LN +P+WSKL+SG +P   +L  I++++M L
Sbjct:   62 ISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGK--DPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKL 183
The following BLAST results are available for this feature:
BLAST of TCONS_00056072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SELT9.189e-3241.13Selenoprotein T OS=Homo sapiens GN=SELENOT PE=1 SV... [more]
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