TCONS_00056308-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056308-protein
Unique NameTCONS_00056308-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056308-protein ID=TCONS_00056308-protein|Name=TCONS_00056308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp
MSKKLANEKEIERNRLEKKWKGVIQLVSALNVKNAGGASSSEEIELFSCF
YLGEAELEKTIEETFKKHGNFLHFKIQIEALKQAYSYLSAALTAAKKAKE
KYPRLLQDTVLLLSKYHFVIGDYDNCLMYIRSMEDISLEGMPRRSKCILS
EAFACKAIALELQGDSTHDEMNKDAIQAYERAGEIALAICIEEEKQGSMK
RNVSTATSSHTTLSKLMEFAMLRPGHMFAESGMVDDAIQNYRALLKIIET
KATANTRKMACRYLAQILLSCSCSQLYTPPSSMSDSISRSNSNTVTMMST
PRKDSPDLFANNSLKRNTLTDSMFCPQDEVEETLLVLLIAEALHLQQSEV
KHTEEDSVSKERVLNETNMIYDLLIFVLTKRDQYLLLSNCLEKTMKLAYE
EFNLWYNFGLSLVCAGKFSRALLMFEQCQKLQPENANVLMFCIKLCINHL
HEYEDGINYATRVLDISSDAYIKASARLAMGICYNNMSIQGKSFEESQCL
LKSAAEVLEKAKELDNNDSEILFNLAWTQVMSKQLSKGFSTLKEALVVNP
SDMNSLHLLALVLSAQKKYKEALDVIETAIEEYPYEFSYV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035473XLOC_035473Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056308TCONS_00056308Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 553..586
e-value: 5.3
score: 16.0
coord: 218..251
e-value: 260.0
score: 2.5
coord: 402..435
e-value: 0.021
score: 24.0
coord: 519..552
e-value: 33.0
score: 10.4
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 519..552
score: 6.874
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 402..435
score: 9.47
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 218..251
score: 6.461
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 553..586
score: 7.7
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 456..512
e-value: 8.6E-5
score: 22.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 339..455
e-value: 4.3E-7
score: 29.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 513..589
e-value: 6.2E-14
score: 51.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 76..277
e-value: 2.2E-6
score: 26.6
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 390..585
NoneNo IPR availablePFAMPF12895ANAPC3coord: 498..578
e-value: 8.3E-7
score: 29.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..302
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 402..586
score: 19.13

Blast
[Close]
BLAST of TCONS_00056308-protein vs. Swiss-Prot (Human)
Match: TTC7B (Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 1.931e-77
Identity = 192/600 (32.00%), Postives = 314/600 (52.33%), Query Frame = 0 
Query:    8 EKEIERNRLEKKWKGVIQLVSALNVKNAGGASSSEEIELFSCFYLGEAELEKTIEE-TFKKHGNFLHFKIQIEALKQAYSYLSAALTAAKKAKEKYPRLLQDTVLLLSKYHFVIGDYDNCL-MYIR-SMEDISLEGMPRRSKCILSEAFACKAIALELQGDST-----HDEMNKDAIQAYERAGEIALAICIEEEK---QGSMKRNVSTATSSHTT-LSKLMEFAMLRPGHMFAESGMVDDAIQNYRALLKIIETKATANTRKMACRYLAQILLSCSCSQLY-----TPP--SSMSDSISRSNSNTVTMMSTPRKDSPDLFANNSLKRNTLTDSMFCPQDEVEETLLVLLIAEALHLQQSEVKHTEEDSVSKERVLNETNMIYDLLIFVLTKRDQYLLLSNCLEKTMKLAYEEFNLWYNFGLSLVCAGKFSRALLMFEQCQKLQPENANVLMFCIKLCINHLHEYEDGINYATRVLDISSD-AYIKASARLAMGICYNNMSIQGKSFEESQCLLKSAAEVLEKAKELDNNDSEILFNLAWTQVMSKQLSKGFSTLKEALVVNPSDMNSLHLLALVLSAQKKYKEALDVIETAIEEYPYEF 587
            E EIER R E +W+ + +LV  L+ K       +E         LGE++LE+ ++E   ++  +    K Q+  +++   +L+AAL       E     LQ++ L+++K ++V GDY   L +Y R  ++D+ L  +P     +++EA+A K + LE    S+     H +  +D I  YE+AG+IAL    E E+        R+     + H   L   +E  + R   ++ ++G +   +  +R LL+ +ET+ T N R    R LA+ILL   C Q Y      PP  S + D + R  +NT T   T R             R    +++FCPQ+  EE LL+LLI+E++  + + +    E    +   L   +++YDLL   L +R QY +LS CLE+ MK A+EEF+LWY F LSL+ AGK +RA+ + ++C +L+P++A + +   KLC+  LH  E+   +A  V+D+    +  KA   LA+G+ Y+  +         + L + A    ++A  L   D +  F LA    +S+Q+ +    +++AL +   D NSLHLLAL+LSAQK Y +AL++I+ A+ EYP  F
Sbjct:   11 ETEIERCRSECQWERIPELVKQLSAKLIANDDMAE-------LLLGESKLEQYLKEHPLRQGASPRGPKPQLTEVRK---HLTAALDRGNLKSE----FLQESNLIMAKLNYVEGDYKEALNIYARVGLDDLPLTAVPPYRLRVIAEAYATKGLCLEKLPISSSTSNLHVDREQDVITCYEKAGDIALLYLQEIERVILSNIQNRSPKPGPAPHDQELGFFLETGLQRAHVLYFKNGNLTRGVGRFRELLRAVETRTTQNLRMTIARQLAEILLRGMCEQSYWNPLEDPPCQSPLDDPL-RKGANTKTYTLTRRA------------RVYSGENIFCPQENTEEALLLLLISESMANRDAVLSRIPEHKSDRLISLQSASVVYDLLTIALGRRGQYEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIPLLAAKLCMGSLHWLEEAEKFAKTVVDVGEKTSEFKAKGYLALGLTYSLQATDASLRGMQEVLQRKALLAFQRAHSLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQGDDANSLHLLALLLSAQKHYHDALNIIDMALSEYPENF 583
The following BLAST results are available for this feature:
BLAST of TCONS_00056308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC7B1.931e-7732.00Tetratricopeptide repeat protein 7B OS=Homo sapien... [more]
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