TCONS_00056444-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056444-protein
Unique NameTCONS_00056444-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056444-protein ID=TCONS_00056444-protein|Name=TCONS_00056444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MADDFDVDDLLEAPFQKVENGDDKVRKSGSESPATEQKKKKKRSRSRSRD
RKRKSRSRSRDRRRSRRSRSKSRDRRRSKSRSKSRERRRRSRSRSRDRRR
SRRSRSRTRSPRRSPLRRRSPDREFVRRSSDGVTTISLRGDRDREDDHIT
QEERDARTVFIMQLARNLTIRDIQDFFSKVGQVRDVRLISDRNSRRSKGI
GYVEFTDPSAVTLAIKLSGQRLLGVPIMVSPTMAEKNRFAAQQAAVTKPS
GPMKLYVGSLHYNITEPMLKAIFEPFGTIDSVQLQYDSETNKSKGYGFVN
FQDSVAAKRAMEQMNGFELVGRPIKVNTVSERSDGSMSFLDDEETEKGGI
EMNAQSRASLMQKLAQTHGSGMQVPQVQQVSGMLSSPLLPLGGSTCLILS
NLFDPTKETDQDWEMDYRNDVLEEVTKHGIVVHISVDTISPEGNIYLKCL
TADVASKIVQSFNGRFFAGRTIRATPVPTANYHTMFADSVNAEKEKKILG
SVPRDSTESKCSCKTECMIYWDHGLIIFSLY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035571XLOC_035571Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056444TCONS_00056444Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR006509RBM39_SF
IPR029123RBM39_linker
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 158..230
e-value: 6.7E-18
score: 75.5
coord: 254..327
e-value: 7.1E-27
score: 105.3
coord: 396..475
e-value: 0.62
score: 8.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 159..224
e-value: 2.3E-13
score: 49.6
coord: 255..325
e-value: 2.7E-21
score: 75.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..234
score: 15.818
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 253..331
score: 19.587
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 392..475
coord: 252..341
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 73..109
coord: 151..231
NoneNo IPR availableGENE3D3.30.70.330coord: 64..239
e-value: 3.1E-24
score: 85.0
NoneNo IPR availableGENE3D3.30.70.330coord: 392..499
e-value: 4.9E-8
score: 32.4
NoneNo IPR availableGENE3D3.30.70.330coord: 240..357
e-value: 2.0E-26
score: 92.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..150
NoneNo IPR availableCDDcd12285RRM3_RBM39_likecoord: 394..478
e-value: 5.1587E-31
score: 114.179
NoneNo IPR availableCDDcd12283RRM1_RBM39_likecoord: 158..229
e-value: 8.64451E-39
score: 135.426
NoneNo IPR availableCDDcd12284RRM2_RBM23_RBM39coord: 255..327
e-value: 8.05515E-40
score: 138.159
IPR006509Splicing factor, RBM39-likeTIGRFAMTIGR01622TIGR01622coord: 40..379
e-value: 1.5E-108
score: 362.0
IPR029123Splicing factor RBM39, linkerPFAMPF15519RBM39linkercoord: 343..413
e-value: 4.4E-15
score: 56.4

Blast
[Close]
BLAST of TCONS_00056444-protein vs. Swiss-Prot (Human)
Match: RBM39 (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 380.563 bits (976), Expect = 9.065e-127
Identity = 239/544 (43.93%), Postives = 327/544 (60.11%), Query Frame = 0 
Query:    1 MADDFDVDDLLEAPFQKVEN----GDDKVRKSGSESPATEQKKKKKRSRSRSRDRKRKSRSRSRDRRRSRRSRSKSRDRRRSKSRSKSRERRRRSRSRSRDRRRSRRSRSRTRSPR-----------RSPLRR-RSPDREFVRRSSDGVTTISLRGDRDREDDHITQEERDARTVFIMQLARNLTIRDIQDFFSKVGQVRDVRLISDRNSRRSKGIGYVEFTDPSAVTLAIKLSGQRLLGVPIMVSPTMAEKNRFAAQQAAVTKPS-GPMKLYVGSLHYNITEPMLKAIFEPFGTIDSVQLQYDSETNKSKGYGFVNFQDSVAAKRAMEQMNGFELVGRPIKVNTVSERSDGSM--SFLDDEETEKGGIEMNAQSRASLMQKLAQTHGSGMQVP----QVQQVSGMLS-----------------------------SPLLPLGGSTCLILSNLFDPTKETDQDWEMDYRNDVLEEVTKHGIVVHISVDTISPEGNIYLKCLTADVASKIVQSFNGRFFAGRTIRATPVPTANYHTMFADSVNA 492
            MADD D++ +LEAP++K EN     +    +S     +  + +  +R RS+S++RKR      +  +   R RS+S++RRRS+SRS+ R  R R RS     + +   R +   P            +SP R+ +SP RE +                    D++T EERDARTVF MQLA  +  RD+++FFS VG+VRDVR+ISDRNSRRSKGI YVEF D S+V LAI L+GQR+LGVPI+V  + AEKNR AA    + K S GPM+LYVGSLH+NITE ML+ IFEPFG I+S+QL  DSET +SKGYGF+ F DS  AK+A+EQ+NGFEL GRP+KV  V+ER+D S   SFLD +E E+ GI++    R  LM +LA+  G+G+Q+P    Q  Q+SG L+                             + + PL  + C  LSN+F+P  E +  W+ + ++DV+EE  KHG V+HI VD  S +GN+Y+KC +   A   V + +GR+FAG+ I A  VP   YH +F DS+ A
Sbjct:    1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPI--------------------DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAE--GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLA-TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA 521
The following BLAST results are available for this feature:
BLAST of TCONS_00056444-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM399.065e-12743.93RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
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