TCONS_00056447-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056447-protein
Unique NameTCONS_00056447-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056447-protein ID=TCONS_00056447-protein|Name=TCONS_00056447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
RKPKLTFFNNTPSFYTQKRHSSFGELNSRLASDFDSNNKDGEYFRKALWD
ENNFLDSLRHICSSFQKNLLRQATWTSRTKYRDKREESFYPLYTFKMKWA
FKEEHSLDSRTSESSKIRAKYPDRIPVVVEKAPRSTIQDIDKRKFLVPSD
LTVAQFMYIIRKRIQLPPEKAMFLFVNKVLPATSATMGAIYEEHKDEDGF
LYIAYSGENTFGM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035572XLOC_035572Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056447TCONS_00056447Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004241Atg8-like
IPR029071Ubiquitin-rel_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004241Autophagy protein Atg8 ubiquitin-likePFAMPF02991Atg8coord: 110..212
e-value: 2.9E-49
score: 165.5
IPR004241Autophagy protein Atg8 ubiquitin-likeCDDcd01611GABARAPcoord: 101..212
e-value: 4.35518E-68
score: 205.547
NoneNo IPR availableGENE3D3.10.20.90coord: 95..213
e-value: 2.0E-53
score: 179.0
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 97..212

Blast
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BLAST of TCONS_00056447-protein vs. Swiss-Prot (Human)
Match: GBRL2 (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.131e-61
Identity = 86/116 (74.14%), Postives = 101/116 (87.07%), Query Frame = 0 
Query:   97 MKWAFKEEHSLDSRTSESSKIRAKYPDRIPVVVEKAPRSTIQDIDKRKFLVPSDLTVAQFMYIIRKRIQLPPEKAMFLFVNKVLPATSATMGAIYEEHKDEDGFLYIAYSGENTFG 212
            MKW FKE+HSL+ R  ES+KIRAKYPDR+PV+VEK   S I DIDKRK+LVPSD+TVAQFM+IIRKRIQLP EKA+FLFV+K +P +S TMG +YE+ KDEDGFLY+AYSGENTFG
Sbjct:    1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
The following BLAST results are available for this feature:
BLAST of TCONS_00056447-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRL21.131e-6174.14Gamma-aminobutyric acid receptor-associated protei... [more]
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