TCONS_00056622-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056622-protein
Unique Name	TCONS_00056622-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	246

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056622-protein ID=TCONS_00056622-protein|Name=TCONS_00056622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MKKVTFFIQILVVIGSTCSTSQVGNKEASLDTKSSQKKTLAHSPASTCRA
GRDGRDGLNGLPGRDGEDGCPGQDGRDGLPGVRGPEGVKGIQGRPGSNGT
KGDQGVPGKDGKDGINGVPGVNGTKGEQGPPGKDGSISGRHFKECAWRLS
THTDTGLLKDCKFNKSKTDSYLMVSISSNIFQATGGACSRWFVTFDGNEC
SPYPIEHAYYSNIANTDHIPFTLKGICKINKSGVVSVGFNVGKCSG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035658	XLOC_035658	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056622	TCONS_00056622	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008160	Collagen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.160.20.50		coord: 27..145 e-value: 0.0016 score: 17.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..138
IPR008160	Collagen triple helix repeat	PFAM	PF01391	Collagen	coord: 51..102 e-value: 9.6E-9 score: 34.8 coord: 75..133 e-value: 1.6E-10 score: 40.5

Blast

[Close]

BLAST of TCONS_00056622-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.713e-21
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 0

Query:  101 KGDQGVPGKDGKDGINGVPGVNGTKGEQGPPGKDGSISGRHF--------KECAW-RLSTHTDTGLLKDCKFNKSKTDSYLMVSISSNI-FQATGGACSRWFVTFDGNECS-PYPIEHAYYSNIANTD-------HIPFTLKGICKINKSGVVSVGFNVGKCS 245
            +G  GVPG+DG  G NG+PG  G  G  G  G+ G      F        K+C+W  L+   D G + +C F K +++S L V  S ++  +     C RW+ TF+G ECS P PIE   Y +  + +       H   +++G+C+   +G+V V   VG CS
Sbjct:   57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCS 219

The following BLAST results are available for this feature:

BLAST of TCONS_00056622-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056622-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTHR1	7.713e-21	33.74	Collagen triple helix repeat-containing protein 1 ...	[more]

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TCONS_00056622-protein (polypeptide) - C. hemisphaerica