TCONS_00057250-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057250-protein
Unique NameTCONS_00057250-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057250-protein ID=TCONS_00057250-protein|Name=TCONS_00057250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MKAIRELILKSKDLQDEIVSEGRGSASVKDFYKRHHKWTEGLLSAAKSVG
YGATILVDAADKVIERKGKFEELVVSSHEIAASTAQLVAASRVKAHKTST
RLPPLMTASKGVGEATAGVVAAVRSGASMTEESQTVPDYSKMSLTQAKRY
EMDSQVKILELEDKLQKERQNLGRLRQAHYQIAVEMYGEDAVTMD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036064XLOC_036064Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057250TCONS_00057250Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002558ILWEQ_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003779 actin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 158..178
NoneNo IPR availableGENE3D1.20.1410.10coord: 1..142
e-value: 6.8E-32
score: 110.2
IPR002558I/LWEQ domainSMARTSM00307ILWEQ_1coord: 1..183
e-value: 1.2E-73
score: 260.7
IPR002558I/LWEQ domainPFAMPF01608I_LWEQcoord: 32..181
e-value: 2.8E-51
score: 173.7
IPR002558I/LWEQ domainPRODOMPD011820coord: 1..181
e-value: 2.0E-52
score: 518.0
IPR002558I/LWEQ domainPROSITEPS50945I_LWEQcoord: 1..183
score: 48.144
IPR002558I/LWEQ domainSUPERFAMILY109885I/LWEQ domaincoord: 1..133

Blast
[Close]
BLAST of TCONS_00057250-protein vs. Swiss-Prot (Human)
Match: HIP1 (Huntingtin-interacting protein 1 OS=Homo sapiens GN=HIP1 PE=1 SV=5)

HSP 1 Score: 232.646 bits (592), Expect = 3.617e-71
Identity = 116/183 (63.39%), Postives = 149/183 (81.42%), Query Frame = 0 
Query:    1 MKAIRELILKSKDLQDEIVSEGRGSASVKDFYKRHHKWTEGLLSAAKSVGYGATILVDAADKVIERKGKFEELVVSSHEIAASTAQLVAASRVKAHKTSTRLPPLMTASKGVGEATAGVVAAVRSGASMTEESQTVPDYSKMSLTQAKRYEMDSQVKILELEDKLQKERQNLGRLRQAHYQIA 183
            M+AI+ LI+ SKDLQ EIV  GRG+AS K+FY ++ +WTEGL+SA+K+VG+GAT++VDAAD V++ +GKFEEL+V SHEIAASTAQLVAAS+VKA K S  L  L  AS+GV +ATAGVVA+  SG S  EE+  + D+S M+LTQ KR EMDSQV++LELE++LQKERQ LG LR+ HY++A
Sbjct:  831 MQAIQVLIVASKDLQREIVESGRGTASPKEFYAKNSRWTEGLISASKAVGWGATVMVDAADLVVQGRGKFEELMVCSHEIAASTAQLVAASKVKADKDSPNLAQLQQASRGVNQATAGVVASTISGKSQIEETDNM-DFSSMTLTQIKRQEMDSQVRVLELENELQKERQKLGELRKKHYELA 1012
The following BLAST results are available for this feature:
BLAST of TCONS_00057250-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HIP13.617e-7163.39Huntingtin-interacting protein 1 OS=Homo sapiens G... [more]
back to top