TCONS_00057255-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057255-protein
Unique Name	TCONS_00057255-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	454

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057255-protein ID=TCONS_00057255-protein|Name=TCONS_00057255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MGSMFENNAFVEYSNITQKKNLATKVTSGGDKISKWKESGFAPLLSKAQY
ICSLCTMYMLQSIVQTFRGSLACEDCYRQGLKTNPGFCPIDKQPIKEGEF
FVDKAKEKEIGNTEIQCPHHQEGCTWKGCIRDFLREHQDRCEYEPTECQL
CHEGVLPCHKDGHMSSCQGIFAAGPCIYWDAGCHFTAENNMEMKTHLTES
LLSHTTLHKLWNNKIIEQFPNLTKKFEEESNKIEEISSKAIKPIKKRQTE
LEQKFQDLSNTFQDFEQQKMIADSHRDDFSVDAIIQPITMRMDDLDLRFQ
LHENTTFDGHLLWKINRVHERTLEAKSKKVTALHSSPCFTSRYGYKYCLR
LYLQGDGMGKDKYLSLFIVIMKSEYDNVLKWPFQKKITFTLINQDQNRKN
LVESMLPSADSSSFQKPKKDMNIASGCPRFVEINRLAPDGFLKDDSLFID
VEIK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036068	XLOC_036068	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057255	TCONS_00057255	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002083	MATH/TRAF_dom
IPR013083	Znf_RING/FYVE/PHD
IPR012227	TNF_rcpt--assoc_TRAF
IPR008974	TRAF-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0042981	regulation of apoptotic process
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042981	regulation of apoptotic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 248..268
None	No IPR available	CDD	cd00270	MATH_TRAF_C	coord: 309..453 e-value: 6.00305E-60 score: 193.978
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 49..99
IPR002083	MATH/TRAF domain	SMART	SM00061	math_3	coord: 313..436 e-value: 2.4E-14 score: 63.6
IPR002083	MATH/TRAF domain	PROSITE	PS50144	MATH	coord: 308..453 score: 17.808
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 45..110 e-value: 3.4E-5 score: 22.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 111..197 e-value: 3.7E-6 score: 26.5
IPR012227	TNF receptor-associated factor TRAF	PIRSF	PIRSF015614	TRAF	coord: 170..454 e-value: 7.5E-68 score: 227.3 coord: 22..170 e-value: 2.5E-15 score: 54.1
IPR008974	TRAF-like	GENE3D	2.60.210.10		coord: 289..454 e-value: 8.8E-35 score: 119.5
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 308..453

Blast

[Close]

BLAST of TCONS_00057255-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.924e-55
Identity = 150/541 (27.73%), Postives = 237/541 (43.81%), Query Frame = 0

Query:   28 SGGDKISKWKESGFAPLLSKA---QYICSLCTMYMLQSIVQTFRGSLACEDCYRQGLKTNPGFCPIDKQPIKEGEFFVDKAKEKEIGNTEIQCPHHQEGCTWK----------------------------GCIRDFLREHQDR-CEYEPTECQLCHEGV------------LPC------HK-----------DGHMSSCQGIFAAGPCIYWDAGCHFTAENNMEMKTHLTESLLSHTTLHKLWNNKIIEQFPNLTKKFEEESNKIEEISSK--AIKPIKKRQTEL------------------EQKFQDLSNTFQDFEQQKMIADSHRDDFSVDAIIQPIT----------------------------------MRMDDLDLRFQLHENTTFDGHLLWKINRVHERTLEAKSKKVTALHSSPCFTSRYGYKYCLRLYLQGDGMGKDKYLSLFIVIMKSEYDNVLKWPFQKKITFTLINQDQNRKNLVESMLPSADSSSFQKPKKDMNIASGCPRFVEINRLAPDGFLKDDSLFIDVEI 453
            S G  +   ++ G+     K    +Y C  C + +L S  QT  G   CE C    L ++   C   ++ I + + F D   ++EI   +I C +   GC  +                              +R  LR+H ++ C+Y    C  C   V             PC      HK             H+S C  + A   C +   GC F    N ++K H   S + H  L K W+N + ++   L  +  E++  I+ + ++  + +   +RQ E+                   +K ++L    + F Q    ADS +   SV+++   +T                                  +R+ D+DLRFQ+ E  +++G L+WKI     R  EA   K  +L+S P +T  +GYK C R+YL GDGMGK  +LSLF VIM+ EYD +L WPF++K+T  L++Q  +R++L ++  P  +SSSF+KP  +MNIASGCP FV    L    ++KDD++FI V +
Sbjct:   26 SAGTPVFVPEQGGYKEKFVKTVEDKYKCEKCHL-VLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSEC--VNAPSTCSFKRYGCVFQG-TNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKS--SVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560

The following BLAST results are available for this feature:

BLAST of TCONS_00057255-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057255-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRAF3	1.924e-55	27.73	TNF receptor-associated factor 3 OS=Homo sapiens G...	[more]

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TCONS_00057255-protein (polypeptide) - C. hemisphaerica