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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00057638-protein ID=TCONS_00057638-protein|Name=TCONS_00057638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MDVDEKTPLGEKDAKPQTAQTPQTALQNRPQGPINKQDANFLCVVCSDRA
SGYHYGVPACEGCKAFFKRSLQSKDLNYKCPAKGNCVIDKMSRKCCQACR
LKKCQDVGMSREFLGSKTKKVKGERGKDYSKPSKQKKTEQSEQTENLVES
TISAKEVELENMVDKLNVLHSEYFLKIKDKSEPGQDVKEQLCTTVGQQLI
RIIDWAKKLPGYCQLAISDQAILLQAAWVDLLVLNWLYFSVISEGGLNIS
RSCHITKDDAKELGFDNIHSHIVLLIDRAKKYRIDEEEVACLKAISLTNA
ESSSLEGPDKVNDLITQFSSALQYYTATRHRENPQKFANLVLILPQLKYL
VNQLIEFLYTMKINCSGPALTDLVIEMLEAKQRL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | zinc ion binding |
| GO:0003707 | steroid hormone receptor activity |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0043401 | steroid hormone mediated signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| biological_process |
GO:0043401 |
steroid hormone mediated signaling pathway |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003707 |
steroid hormone receptor activity |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 59..74
score: 55.34
coord: 101..109
score: 59.47
coord: 43..59
score: 56.77
coord: 93..101
score: 59.73 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 40..112
e-value: 4.0E-36
score: 136.0 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 42..111
e-value: 3.5E-28
score: 97.8 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 43..69 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 40..116
score: 19.134 |
| IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 194..215
score: 31.41
coord: 215..231
score: 40.47
coord: 282..297
score: 38.64
coord: 105..115
score: 35.39
coord: 339..356
score: 26.32 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 193..351
e-value: 7.1E-22
score: 88.7 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 188..363
e-value: 8.8E-22
score: 77.6 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 99..107
coord: 138..380 |
| IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 35..103
e-value: 1.2E-28
score: 98.6 |
| None | No IPR available | GENE3D | 1.10.565.10 | | coord: 104..381
e-value: 1.2E-50
score: 171.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..33 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 119..145 |
| None | No IPR available | CDD | cd06916 | NR_DBD_like | coord: 43..112
e-value: 1.48758E-38
score: 133.071 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 41..118 |
Blast
BLAST of TCONS_00057638-protein vs. Swiss-Prot (Human)
Match: ERR3 (Estrogen-related receptor gamma OS=Homo sapiens GN=ESRRG PE=1 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 4.963e-66 Identity = 122/342 (35.67%), Postives = 191/342 (55.85%), Query Frame = 0
Query: 42 LCVVCSDRASGYHYGVPACEGCKAFFKRSLQSKDLNYKCPAKGNCVIDKMSRKCCQACRLKKCQDVGMSREFLGSKTKKVKGERGKDYSKPSKQKKTEQSEQTENLVESTISAKEVELENMVDKLNVLHSEYFLKIKDKSEPGQDVKE--QLCTTVGQQLIRIIDWAKKLPGYCQLAISDQAILLQAAWVDLLVLNWLYFSVISEGGLNISRSCHITKDDAKELGFDNIHSHIVLLIDRAKKYRIDEEEVACLKAISLTNAESSSLEGPDKVNDLITQFSSALQYYTATRHRENPQKFANLVLILPQLKYLVNQLIEFLYTMKINCSGPALTDLVIEMLEAK 381
LC+VC D ASGYHYGV +CE CKAFFKR++Q ++ Y CPA C I K RK CQACR KC VGM +E G + +V+G R K K+ +E + L + + +V L V E + D + P D+K LC ++L+ II WAK +PG+ L+++DQ LLQ+AW+++L+L +Y S+ E L + + +D +K G ++++ I+ L+ + K ++++EE LKAI+L N++S +E + V L ALQ Y A +H E+P++ +++ LP L+ + ++ Y +K+ P + L +EMLEAK
Sbjct: 127 LCLVCGDIASGYHYGVASCEACKAFFKRTIQG-NIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKE--GVRLDRVRGGR-------QKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVP-MHKLFLEMLEAK 457
The following BLAST results are available for this feature:
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