TCONS_00057737-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057737-protein
Unique Name	TCONS_00057737-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	600

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057737-protein ID=TCONS_00057737-protein|Name=TCONS_00057737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=600bp
MRTLANIKIRIPAIIVSKSRKLLKMMTTYNNSSTRQNGGISNTNITATEA
LNGLSDGLSLATKLSILCIILTFALLGNVILIVSILKTPRMRKSLTNQLI
LNLALCDVVIVITGIPGEIINQTLGTWVLGEIGCRLLYPVSTYAVIAAVT
TLLMIGVDRFFAASYPFRYRTLKSKSHLTLVIVHVYALACVVPYAFHLTL
TEDDGVIICDETWSDSTSTIYTIFLFVIQYGAPLPIIVALYAKTWIRIKH
QNDSVIKNAESMHRGSMKRQDDRKRESGEYARQSLLSVDDNSLAPNHSTR
RRSRSLLDAIRESFISLTGEDGEHSHKYVSQTAIDRHKQTTKLLKLFICV
ILVFAICMLPYHIIWLNIAITGKSLLSNETHYLIAYLLTYVNSVINPIIY
GIHPRFRILYKNCIKEVLNCCTNVCFKRQFYETEEIRGSTADSVYSVWTP
ETFRKRISRTFSTGSKSSLKKRNKSRSDSLPKNGTSRRRSKTVPPTNIPV
KKRSLTIPQITVTDIEHDIGDVFTDENRLKVSVSSSCSSENDDVFVTNNQ
ALTEYRASFFNSNDEGNSKFDQRGLLYIDKDFVMSRDGLLLLETMSESDC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036400	XLOC_036400	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057737	TCONS_00057737	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 141..163 score: 23.53 coord: 222..245 score: 22.75 coord: 382..408 score: 27.35 coord: 96..117 score: 30.47 coord: 343..367 score: 25.46 coord: 62..86 score: 18.37
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 71..414 e-value: 3.3E-5 score: -32.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 77..400 e-value: 4.0E-47 score: 160.6
None	No IPR available	GENE3D	1.20.1070.10		coord: 39..443 e-value: 1.4E-58 score: 197.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 464..500
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 56..253 coord: 329..426
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 77..400 score: 36.52

Blast

[Close]

BLAST of TCONS_00057737-protein vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.456e-26
Identity = 109/460 (23.70%), Postives = 189/460 (41.09%), Query Frame = 0

Query:   57 GLSLATKLSILCIILTFALLGNVILIVSILKTPRMRKSLTNQLILNLALCDVVIVITGIPGEIINQTLGTWVLGEIGCRLLYPVSTYAVIAAVTTLLMIGVDRFFAASYPFRYRTLKSKSHLTLVIVHVY---ALACVVPYAFHLTLTEDDGVIIC--DETWSD-STSTIYTIFLFVIQYGAPLPIIVALYAKTWIRIKHQNDSVIKNAESMHRGSMKRQDDRKRESGEYARQSLLSVDDNSLAPNHSTRRRSRSLLDAIRESFISLTGEDGEHSHKYVSQTAIDRHKQTTKLLKLFICVILVFAICMLPYHIIWLNIAITGKSLLSNETHYLIAYLLTYVNSVINPIIYGIHPRFRILYKNCIKEVLNCCTNVCFKRQFYETEEIRGSTADSVYSVWTPETFRKRISRTFSTGSKSSL----KKRNKSRSDSLPKNGTSRRRSKTVPPTNIPVKKRSLT 506
            G+ +   L +L I+      GNV++I +I K  R+ +++TN  I +LA  D+V+ +  +P    +  +  W  G   C     +    V A++ TL +I VDR+FA + PF+Y++L +K+   ++I+ V+    L   +P   H         I C  +ET  D  T+  Y I   ++ +  PL I+V +Y++ +   K Q   + K+    H  ++ + +   R                     H  RR S+  L               EH                 K LK    ++  F +C LP+ I+ + + +   +L+  E + L+ + + YVNS  NP+IY   P FRI +    +E+L      C +R                    + + +    S   +TG +S      +K NK   + LP          TVP  NI  + R+ +
Sbjct:   35 GMGIVMSLIVLAIVF-----GNVLVITAIAKFERL-QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTG-------------------HGLRRSSKFCLK--------------EH-----------------KALKTLGIIMGTFTLCWLPFFIVNI-VHVIQDNLIRKEVYILLNW-IGYVNSGFNPLIYCRSPDFRIAF----QELL------CLRRS-------------------SLKAYGNGYSSNGNTGEQSGYHVEQEKENKLLCEDLPGTEDFVGHQGTVPSDNIDSQGRNCS 407

The following BLAST results are available for this feature:

BLAST of TCONS_00057737-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057737-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADRB2	2.456e-26	23.70	Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB...	[more]

You are here

TCONS_00057737-protein (polypeptide) - C. hemisphaerica