TCONS_00057740-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057740-protein
Unique NameTCONS_00057740-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057740-protein ID=TCONS_00057740-protein|Name=TCONS_00057740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MGWIKKTFIFVLPILSYYIYKIVKANFLIFVLITSQIYPRLPIENFAKLN
PDIADFVTGDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLLEAGG
GENMLSEIPATTFLNIKTSIDWYFLSEPANDGKTSTIFKNGQLAMPRGKV
LGGTSTINAMAYTRGNKRDYDSWEEQGNPGWGYEDVLPYFKKSEDQTNEK
LTKDTKYHSTGGYLTIEDVEKAEVFVKLMDGFSKILPENKDYNGEKQSGT
VFYQNTIRNGQRCSTAKAYLKPKRSNLHVIPFSHVQKILTDPETKTAKGV
VYKKNGKSMTVKATKEIILSAGAFGSPQILMLSGVGPKEELEKHGIPLIK
ELQVGYNLQDHVNVGVHMVFNESIELPFEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036402XLOC_036402Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057740TCONS_00057740Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000172GMC_OxRdtase_N
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.450.10coord: 100..170
e-value: 4.7E-22
score: 77.0
NoneNo IPR availableGENE3D3.30.560.10coord: 171..377
e-value: 1.2E-69
score: 234.7
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPFAMPF00732GMC_oxred_Ncoord: 67..362
e-value: 2.4E-72
score: 243.7
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00624GMC_OXRED_2coord: 322..336
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00623GMC_OXRED_1coord: 148..171
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 65..374

Blast
[Close]
BLAST of TCONS_00057740-protein vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 2.329e-57
Identity = 124/328 (37.80%), Postives = 177/328 (53.96%), Query Frame = 0 
Query:   65 DEYDFVVIGAGSAGAVVANRLSENKSWKILLLEAG-----GGENMLS---EIPATTFLNI-KTSIDWYFLSEPAN--DGKTSTIFKNGQLAMPRGKVLGGTSTINAMAYTRGNKRDYDSWEEQGNPGWGYEDVLPYFKKSEDQTNEKLTKDTKYHSTGGYLTIEDVEKAE-VFVKLMDGFSKI-LPENKDYNGEKQSGTVFYQNTIRNGQRCSTAKAYLKP--KRSNLHVIPFSHVQKILTDPETKTAKGVVYKKNGKSMTVKATKEIILSAGAFGSPQILMLSGVGPKEELEKHGIPLIKELQ-VGYNLQDHVNVGVHMVFNESIEL 376
            DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG      G   LS    +PA    N+     +W + +E     DG+         L  PRG+V GG+S++NAM Y RG+  DY+ W+ QG  GW Y   LPYF+K++          ++Y    G L +   +    +    ++   +   P  +D NG +Q G  +   TI  G+R S A AYL P   R+NL     + V ++L   E   A GV Y KNG+S    A+KE+ILS GA  SPQ+LMLSG+G  ++L+K GIP++  L  VG NLQDH+ + +       I L
Sbjct:   39 DEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHE----LGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITL 352
The following BLAST results are available for this feature:
BLAST of TCONS_00057740-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH2.329e-5737.80Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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