TCONS_00057891-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057891-protein
Unique NameTCONS_00057891-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057891-protein ID=TCONS_00057891-protein|Name=TCONS_00057891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
PGIDGLPYDFYKTFCEEISPILVEIFQFITTVSRMSDSQQVAVISLLPKT
GDLLDLTNWRPVSLQCCDAKIYSKILSNRLKTVMTDLVSEEQVCAVPGRH
IQDHTLLVRELIAYSNHKGTPLYIISLDQEKAFDRVDWDFMFQVLTRLGI
PKTFIEAIRPLYSNPVSMVNVNGHMTDPIPIKRGVRQGCPLSMFLYALVA
ETIGLAIQNDSAIVGADIPGSRKVAKRIQYVDDTNPIVRDTDSIYPLFEL
LKKYESGTGARLCPTKTRGIAINHPLGKHLCPDIPIKWNRPDTKILGIIF
TSNLTRSAELNWDRVLEKAEKRVGSLADRNISLQGKVRIINTLVLSKAWH
VGRVFTPPERHKMLLMKLVFPYIWKPKKETVSRQAIFLPLEMGGLSLLSL
SHQCASLQISDILKIGTDKAPLWTFLATYWLADQIYGLKDEWKHLFNNNR
PKNIFAK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036501XLOC_036501Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057891TCONS_00057891Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 77..298
e-value: 9.9E-17
score: 60.6
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 42..300
e-value: 1.19633E-47
score: 163.616
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 47..268
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 48..298
e-value: 4.5E-36
score: 124.4
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 28..300
score: 12.914

Blast
[Close]
BLAST of TCONS_00057891-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.896e-44
Identity = 119/410 (29.02%), Postives = 202/410 (49.27%), Query Frame = 0 
Query:    1 PGIDGLPYDFYKTFCEEISPILVEIFQFITTVSRMSDSQQVAVISLLPKTG-DLLDLTNWRPVSLQCCDAKIYSKILSNRLKTVMTDLVSEEQVCAVPGRHIQDHTLLVRELIAYSNH-KGTPLYIISLDQEKAFDRVDWDFMFQVLTRLGIPKTFIEAIRPLYSNPVSMVNVNGHMTDPIPIKRGVRQGCPLSMFLYALVAETIGLAIQNDSAIVGADIPGSRKVAKRIQYVDD-----TNPIVRDTDSIYPLFELLKKYESGTGARLCPTKTRGIAINH--PLGKHLCPDIPIKWNRPDTKILGIIFTSNLTRSAELNWDRVLEKAEKRVGSLADRNISLQGKVRIINTLVLSKAWHVGRVFTPPERHKML----LMKLVFPYIWKPKKETVSRQAIFLPLEMGGLSL 397
            PG DG   +FY+ + EE+ P L+++FQ I     + +S   A I L+PK G D     N+RP+SL   DAKI +KIL+NR++  +  L+  +QV  +PG     +      +I + N  K     IIS+D EKAFD++   FM + L +LGI   +++ IR +Y  P + + +NG   +  P+K G RQGCPLS  L+ +V E +  AI+ +  I G  + G  +V   + + DD      NPIV    S   L +L+  +   +G ++   K++    N+       +  ++P        K LGI  T ++    + N+  +L++ ++      +   S  G++ I+   +L K   + R    P +  M     L K    +IW  K+  +++  +    + GG++L
Sbjct:  471 PGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQL-GKEEVKLSL-FADDMIVYLENPIV----SAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKV--IYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITL 872
The following BLAST results are available for this feature:
BLAST of TCONS_00057891-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF22.896e-4429.02LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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