TCONS_00057895-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057895-protein
Unique NameTCONS_00057895-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057895-protein ID=TCONS_00057895-protein|Name=TCONS_00057895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=604bp
MSDIDLQNYVSDKLHEVLGMSDKNVVHYLIGLGKKTDDVEKYVKELNNVL
GDEGNFQSVAKDIWNRIPRAVKGENMNRVKERIAKAEEVENQSYKMLSDT
DEEDLVIRPTKVKKKKKDREKKKKKKDNTSSSEEDEEKHRLRDLRERDEY
AERVKKRDKDKTRNVTEKSDKKAYDEAKKRLQMEEKDRRSLIPNLRDRAR
KDYVMKRKGEKVESLKEELDEDEKMFDERDLTEREKLERKYKKKIYKIAT
DYAEVEKEVKVQRYVMPSDKDGYVDTFEDKTVTDGSFVSEQHRWEDSKLD
TAVMRFGAKDAKQKDEKHYELLLEEEQIAFVMADKMSGSRKHGDDDSKER
LSEHDKKIMSIAETRKSLPIFKYRDLLLQAIEEHQVLIIEGETGSGKTTQ
LPQYLVEGGYTKDGKKVGCTQPRRVAAMSVAARVAQEMDVKLGNEVGYSI
RFEDCSSEKTIVKYMTDGMLLREFLGEPDLESYSVMIIDEAHERTLHTDI
LFGLIKDIARFRSDIKLLISSATLDAEKFSSFFDDAPIFRIPGRRFPVDI
FYTKAPEADYLDACVVTVLQIHLTQPLGDVLVFLSGQEEIETCNXKTSPD
SDPT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036504XLOC_036504Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057895TCONS_00057895Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 205..225
NoneNo IPR availableGENE3D3.40.50.300coord: 545..599
e-value: 1.8E-9
score: 36.9
NoneNo IPR availableGENE3D1.20.1390.10coord: 2..80
e-value: 3.2E-5
score: 23.5
NoneNo IPR availableGENE3D3.40.50.300coord: 367..527
e-value: 2.6E-29
score: 101.6
NoneNo IPR availableCDDcd00046DEXDccoord: 385..524
e-value: 1.20455E-33
score: 124.372
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 366..551
e-value: 1.8E-32
score: 123.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 378..542
score: 20.267
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 378..527
e-value: 2.1E-7
score: 30.8
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 484..493
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 362..595

Blast
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BLAST of TCONS_00057895-protein vs. Swiss-Prot (Human)
Match: DHX16 (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 319/625 (51.04%), Postives = 435/625 (69.60%), Query Frame = 0 
Query:    6 LQNYVSDKLHEVLGMSDKNVVHYLIGLGKKTDDVEKYVKEL--NNVLGDEGNFQSVAKDIWNRIPRAVKGENMNRVKERIAKAEEVENQSYKMLSDTDEED--LVIRP--------------------------TKVKKKKKDREKKKKKKDNTSSSEEDEEKHRLRDLRERDEYAERVKKRDKDKTRNVTEKSDKKAYDEAKKRLQMEEKDRRSLIPNLRDRARKDYVMKRKGEKVESLKEELDEDEKMFDERDLTEREKLERKYKKKIYKIATDY---AEVEKEVKVQRYVMPSDKDG----YVDTFEDKTVTDGSFVSEQHRWEDSKLDTAVMRFGAKDAKQKDEKHYELLLEEEQIAFVMADKMSGSRKHGDDDSKERLSEHDKKIMSIAETRKSLPIFKYRDLLLQAIEEHQVLIIEGETGSGKTTQLPQYLVEGGYTKDGKKVGCTQPRRVAAMSVAARVAQEMDVKLGNEVGYSIRFEDCSSEKTIVKYMTDGMLLREFLGEPDLESYSVMIIDEAHERTLHTDILFGLIKDIARFRSDIKLLISSATLDAEKFSSFFDDAPIFRIPGRRFPVDIFYTKAPEADYLDACVVTVLQIHLTQPLGDVLVFLSGQEEIETC 593
            L+ +V D+LH VLG+S+++V  +LIG  ++    E++V+ L   + L   G  +  A  +WN++PR    E   R  ER A+A   +N+SY++L D++E     V R                           ++  KKK    K++ +K  +    E  E+ RL+DL ERD +AERV++RDKD+TRNV E+SDKKAY+EA+KRL+M E+DR++++P LR ++R++Y+ KR+ EK+E L+ EL ++E +F + +L+  E+ E KYK+++  +A +Y    E EK     RY MP +  G     VD  E+++   G    EQ RWE+++L  A ++FGA+DA  ++ K+  +L EEE I FV A ++ G     ++ S    S   ++  SI   R+SLP+F +R+ LL AI  HQVLIIEGETGSGKTTQ+PQYL E GYT  G K+ CTQPRRVAAMSVAARVA+EM VKLGNEVGYSIRFEDC+SE+T+++YMTDGMLLREFL EPDL SYSV+++DEAHERTLHTDILFGLIKD+ARFR ++K+L++SAT+D  +FS+FFDDAP+FRIPGRRFPVDIFYTKAPEADYL+ACVV+VLQIH+TQP GD+LVFL+GQEEIE  
Sbjct:    7 LERWVQDELHSVLGLSERHVAQFLIGTAQRCTSAEEFVQRLRDTDTLDLSGPARDFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTEKPESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGE---EQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGD----EEPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAA 624
The following BLAST results are available for this feature:
BLAST of TCONS_00057895-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX160.000e+051.04Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
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